With the TIMIT dataset (.wav sound files, .wrd words annotations and .phn phones annotations):

1. Encode the wave sound in MFCCs: run python mfcc_and_gammatones.py --htk-mfcc $DATASET/train and python mfcc_and_gammatones.py --htk-mfcc $DATASET/test producing the .mfc files with HCopy according to wav_config (.mfc_unnorm is no normalization)

2. Adapt the annotations given in .phn in frames into nanoseconds in .lab run python timit_to_htk_labels.py $DATASET/train and
   python timit_to_htk_labels.py $DATASET/test producing the .lab files

3. Replace phones according to the seminal HMM paper of 1989: "Speaker-independant phone recognition using hidden Markov models", phones number (i.e. number of lines in the future labels dictionary) should go from 61 to 39. run python substitute_phones.py $DATASET/train and python substitute_phones.py $DATASET/test

4. run python create_phonesMLF_and_labels.py $DATASET/train and python create_phonesMLF_and_labels.py $DATASET/test

You can also do that with a make prepare dataset=DATASET_PATH.

You're ready for training with HTK (mfc and lab files)!

Train monophones HMM:

make train_monophones dataset_train_folder=PATH_TO_YOUR_DATASET/train
make test_monophones dataset_test_folder=PATH_TO_YOUR_DATASET/test

Or, train triphones:

TODO
make train_triphones dataset_train_folder=PATH_TO_YOUR_DATASET/train
make test_triphones dataset_test_folder=PATH_TO_YOUR_DATASET/test

1. Do full states forced alignment of the .mlf files with make align.

2. Do a first preparation of the dataset with src/timit_to_numpy.py or src/mocha_timit_to_numpy.py (depending on the dataset) on the above aligned .mlf files.

3. Train the deep belief networks on it, either using DBN/DBN_timit.py or DBN/DBN_Gaussian_timit.py or DBN/DBN_Gaussian_mocha_timit.py (see inside these files for parameters). Save (pickle at the moment) the DBN objects and the states/indices mappings.

4. Use the serialized DBN objects and states/indices mappings with viterbi.py, just cd to DBN and do:

   python ../src/viterbi.py output_dbn.mlf /fhgfs/bootphon/scratch/gsynnaeve/TIMIT/test/test.scp ../tmp_train/hmm_final/hmmdefs --d ../dbn_5.pickle ../to_int_and_to_state_dicts_tuple.pickle