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bam2x

bam2x provide command line programs to analyze the NGS data.

Library Dependency:

  • pysam
  • twobitreader ( needed for query 2bit file)
  • bxpython (optional, needed for query bigwig file)
  • bitarray
  • numpy

Optional Dependency:

  • matplotlib

bam2x branch is a working branch master branch is release branch xplib branch is old scripts

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extract information from bam (sequence alignment) files and generate tables for further analysis.

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