GitHub - cfriedline/gypsy

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Name		Name	Last commit message	Last commit date
Latest commit History 480 Commits
archive		archive
.gitattributes		.gitattributes
.gitignore		.gitignore
Dockerfile		Dockerfile
README.md		README.md
apollo.ipynb		apollo.ipynb
barcode_creator.ipynb		barcode_creator.ipynb
barcodes_i1.txt		barcodes_i1.txt
barcodes_i3.txt		barcodes_i3.txt
bayenv.ipynb		bayenv.ipynb
bayenv_covmat_convergence.ipynb		bayenv_covmat_convergence.ipynb
blast.ipynb		blast.ipynb
busco.ipynb		busco.ipynb
covariance.ipynb		covariance.ipynb
dDocent.ipynb		dDocent.ipynb
docker_notebook.sh		docker_notebook.sh
fastq_stats.ipynb		fastq_stats.ipynb
fit_dist.R		fit_dist.R
free_cpu.ipynb		free_cpu.ipynb
freeze.txt		freeze.txt
gemma_imputed.ipynb		gemma_imputed.ipynb
gm_phenotype_analysis.R		gm_phenotype_analysis.R
hdfstorehelper.py		hdfstorehelper.py
hierfstat.ipynb		hierfstat.ipynb
i1.txt		i1.txt
i3.txt		i3.txt
ipengine_setup.ipynb		ipengine_setup.ipynb
ld_stats.ipynb		ld_stats.ipynb
makefile		makefile
maker.ipynb		maker.ipynb
maptest.ipynb		maptest.ipynb
masurca3.ipynb		masurca3.ipynb
nbstripout		nbstripout
outflank.ipynb		outflank.ipynb
packages.ipynb		packages.ipynb
pca.ipynb		pca.ipynb
pimass.ipynb		pimass.ipynb
pimass_imputed.ipynb		pimass_imputed.ipynb
pimass_isect.ipynb		pimass_isect.ipynb
quast.ipynb		quast.ipynb
read_demult.ipynb		read_demult.ipynb
read_filtering.ipynb		read_filtering.ipynb
read_mapping_masked.ipynb		read_mapping_masked.ipynb
read_mapping_raw.ipynb		read_mapping_raw.ipynb
read_masking.ipynb		read_masking.ipynb
run_bayenv.ipy		run_bayenv.ipy
samtools1.2_pipeline_masked.ipynb		samtools1.2_pipeline_masked.ipynb
samtools1.2_pipeline_masked_imputed-beagle.ipynb		samtools1.2_pipeline_masked_imputed-beagle.ipynb
snp_calling.ipynb		snp_calling.ipynb
snp_fasta_export.ipynb		snp_fasta_export.ipynb
snp_filtering.ipynb		snp_filtering.ipynb
snp_intersect.ipynb		snp_intersect.ipynb
snpassoc.ipynb		snpassoc.ipynb
squat.ipynb		squat.ipynb
sr_config_gypsy.txt		sr_config_gypsy.txt
structure.ipynb		structure.ipynb
translation_table.csv		translation_table.csv
tw_calc.R		tw_calc.R
twtable		twtable
utils.py		utils.py
vincent.ipynb		vincent.ipynb
wells.txt		wells.txt

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Gypsy moth

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Gypsy moth

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