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a repository for xray fluorescence data processing

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To be completed

Pre-requisites

Install Anaconda and create a python 3.7 conda environment:

$ conda create -n py37 python=3.7
$ source activate py37

add conda channels:

$ conda config --add channels conda-forge
$ conda config --add channels fabriciosm

Installation

Install with:

$ conda install -c fabriciosm xrftomo 

OR install from source along with all dependencies:

$ git clone https://github.com/FabricioSMarin/xrftomo.git
$ cd xrftomo
$ conda install -c conda-forge dxchange
$ conda install -c conda-forge tomopy
$ conda install -c conda-forge pyqt
$ conda install -c conda-forge h5py
$ conda install -c conda-forge scikit-image
$ conda install -c conda-forge pandas
$ conda install -c conda-forge seaborn
$ conda install -c conda-forge pyqtgraph
$ conda install -c conda-forge scipy
$ conda install git
$ conda install numpy


$ python setup.py install
$ cd bin 
$ python xrftomo init

in the prepared virtualenv or as root for system-wide installation.

Usage

You can run xrftomo using a command line, for a full list of options use:

$ bin/xrftomo gui -h

or a GUI with:

$ bin/xrftomo gui
$ or double-click on xrftomo.sh
If your python installation is in a location different from #!/usr/bin/env python please edit the first line of the bin/xrftomo file to match yours.

You can also load configuration parameters from a configuration file called xrftomo.conf. You can create a template with

$ xrftomo init
$ or double-click xrftomo_init.sh

Contribute

License

The project is licensed under the BSD-3 <https://github.com/tomography/xrftomo/blob/master/LICENSE.txt>_ license.

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