from org.opentreeoflife.smasher import Taxonomy

from org.opentreeoflife.smasher import Reportx

import taxonomies

ott = Taxonomy.newTaxonomy()

skel = Taxonomy.getTaxonomy('tax/skel/', 'skel')

ott.setSkeleton(skel)

def report(tax, tag):

Reportx.report(tax, tag + '-mrca-report.tsv')

if True:

report(taxonomies.loadIrmng(), 'irmng')

else:

silva = taxonomies.loadSilva()

ott.notSame(silva.taxon('Ctenophora', 'Coscinodiscophytina'),

skel.taxon('Ctenophora'))

report(silva, 'silva')

report(taxonomies.loadH2007(), 'h2007')

report(taxonomies.loadFung(), 'if')

report(taxonomies.loadNcbi(), 'ncbi')

report(taxonomies.loadGbif(), 'gbif')

report(taxonomies.loadIrmng(), 'irmng')

report(taxonomies.loadOtt(), 'ott')