This is a prototype simulation engine for biological models. At the moment, it is very crude and intended for experimentation, not for production use.
(Thanks to Kevin Shi @xpspectre)
- Install Anaconda with Python 3.5 package.
- Make sure the right python and conda executables are on your path. I did the rest of this in the console emulator cmder.
- Make a new conda env:
conda create --name biolucia numpy scipy matplotlib sympy
- Activate the new conda env:
activate biolucia
Make sure the python and pip executables point to the right ones. - Install more packages:
pip install aenum typing funcparserlib
It's the standard virtualenv and install from the following requirements.txt:
aenum==1.4.5
cycler==0.10.0
funcparserlib==0.3.6
matplotlib==1.5.1
mpmath==0.19
numpy==1.11.1
pyparsing==2.1.5
python-dateutil==2.5.3
pytz==2016.4
scipy==0.17.1
six==1.10.0
sympy==1.0
typing==3.5.2.2