About

This is the research project for MO640 (Computational Biology)

Students

git clone https://github.com/alceubissoto/mo640.git

# create docker image and run container
bash start_docker.sh

Inside the docker image explained in section "How to get started", run this bash script:

bash final_datasets.sh

bash run_genetic_runner.sh

bash run_fitch.sh

Name		Name	Last commit message	Last commit date
Latest commit History 110 Commits
data_n05_100		data_n05_100
data_n10_100		data_n10_100
data_n10_std10		data_n10_std10
data_n10_std25		data_n10_std25
data_n10_std50		data_n10_std50
data_n15_100		data_n15_100
data_n15_std10		data_n15_std10
data_n15_std25		data_n15_std25
data_n15_std50		data_n15_std50
data_n20_100		data_n20_100
data_n20_std10		data_n20_std10
data_n20_std25		data_n20_std25
data_n20_std50		data_n20_std50
data_n25_std10		data_n25_std10
data_n25_std25		data_n25_std25
data_n25_std50		data_n25_std50
data_n30_std10		data_n30_std10
data_n30_std25		data_n30_std25
data_n30_std50		data_n30_std50
final_results		final_results
phylip_linux		phylip_linux
phylip_mac		phylip_mac
results		results
tests		tests
.gitignore		.gitignore
Dockerfile		Dockerfile
README.md		README.md
Results.ipynb		Results.ipynb
cgp.py		cgp.py
create_dataset.py		create_dataset.py
ends.csv		ends.csv
final_datasets.sh		final_datasets.sh
fitch_nj.csv		fitch_nj.csv
fitch_nj_comparison.py		fitch_nj_comparison.py
genetic_runner.py		genetic_runner.py
input_fitch		input_fitch
neighbor_join.py		neighbor_join.py
overleaf_source.zip		overleaf_source.zip
phylip.py		phylip.py
plotTree.py		plotTree.py
requirements.txt		requirements.txt
results_phylip.csv		results_phylip.csv
run_fitch.sh		run_fitch.sh
run_genetic_runner.sh		run_genetic_runner.sh
start_docker.sh		start_docker.sh
weight_cgp.py		weight_cgp.py