Miscellaneous scripts.

Organize a mess of dicoms into exams/series.

dicomsort.py tarsort ./mess/of/dicoms ./sort/dest ./tar/dest

The sortable dicoms will be organized into the sort destination (./sort/dest from example) by exam number and series number. Unsortable dicoms will be left in the original source directory (./mess/of/dicoms from example).

Output tarfiles will be placed into the tar destination (./tar/dest from example), and be named by their exam number and series number.

Reconstruct and concatenate two niftis in the order the dicoms.tgz sources are provided on the command line. To reconstruct a Siemens multicoil scan, give the individual coil dicom.tgz as the first input, and the combined coil dicom.tgz as the second input.

siemens_multicoil.py ./path/to/individual_coils_dicoms.tgz ./path/to/combined_coils_dicoms.tgz

The output nifti will be named after the first dataset's exam and series number, suffixed with '_multicoil'i.