SGDBackend-Nex2

A restful web service for the Saccharomyces Genome Database (SGD) NEX 2, as well as an authenticated curation interface.

Setup

Prerequisites: node.js 6.0.0+ and Python 2.7.x. To simplify Python setup, virtualenv is highly suggested.

Make sure you have the needed environmental variables configured in dev_variables.sh, then

$ make build

$ make run

Be sure to have a test_variables.sh file to configure test environemntal variables.

$ make tests

This command runs both the JavaScript tests as well as the Python tests. To run just the JavaScript tests

$ npm test

Or the python tests

$ source test_variables.sh && nosetests -s

Caching uses varnish. To rebuild the cache, run

$ source /data/envs/sgd/bin/activate && source prod_variables.sh && python src/loading/scrapy/pages/spiders/pages_spider.py

using environmental variable CACHE_URLS, a comma-sepratated list of varshish host URLs (or a single one) such as http://locahost:5000.

Name		Name	Last commit message	Last commit date
Latest commit History 2,158 Commits
config		config
docs		docs
lib/capistrano/tasks		lib/capistrano/tasks
schema		schema
scripts		scripts
src		src
system_config		system_config
templates		templates
test		test
.babelrc		.babelrc
.eslintrc		.eslintrc
.gitignore		.gitignore
.travis.yml		.travis.yml
CONTRIBUTING.md		CONTRIBUTING.md
Capfile		Capfile
Gemfile		Gemfile
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
development.ini		development.ini
package.json		package.json
production.ini		production.ini
requirements.txt		requirements.txt
setup.py		setup.py
webpack.config-test.js		webpack.config-test.js
webpack.config.babel.js		webpack.config.babel.js