This public repository contains the GNPS Workflows running on GNPS (http://gnps.ucsd.edu).
The GNPS community is always welcoming suggestions and contributions. Be part of the community and contribute !
Your are kindly invited to open "issues" on our GitHub repositories, and propose changes to our Documentation and Workflows. We are also welcoming direct pull request on the respective repository.
GNPS_Documentation GitHub respository that points to the documentation website (https://ccms-ucsd.github.io/GNPSDocumentation).
GNPS_Workflows Present GitHub repository that contains the workflows available on GNPS (http://gnps.ucsd.edu):
Discussions and suggestions can also take place on the GNPS forum at https://groups.google.com/forum/#!forum/molecular_networking_bug_reports.
| Workflow | GNPS Link | Beta Link |
|---|---|---|
| Molecular Networking | Workflow | Workflow |
| Large Scale Library Search | Workflow | Workflow |
| MASST | Workflow | Workflow |
| Feature-Based Molecular Networking | Workflow | Workflow |
| MS2LDA Motif DB | Workflow | Workflow |
| MolNetEnhancer/MetaboDistTree | Workflow | Workflow |
| MSMS-Chooser | Workflow | Workflow |
| OpenMS Feature Detector for FBMN - Future | Workflow | Workflow |
| MSHub-GC Deconvolution | Workflow | Workflow |
| Library Search/Molecular Networking GC | Workflow | Workflow |
| Merge Polarity Networks | Workflow | Workflow |
| Microbiome-Metabolomics Association - mmvec | Workflow | Workflow |
| Sirius - Bocker Lab | Workflow | Workflow |
| Qemistree | Workflow | Workflow |
| Link | Description | Status |
|---|---|---|
| gnps-external.ucsd.edu | Linking out structures to external services (e.g. NPAtlas) | Active |
| gnps-qiime.ucsd.edu | Qiime2 processing worker | Inactive |
| gnps-classyfire.ucsd.edu | Classyfire caching proxy for GNPS | Active |
| gnps-libraries.ucsd.edu | Exploring GNPS Libraries | Inactive |
| gnps-structure.ucsd.edu | Structure processing worker | Active |
| redu.ucsd.edu | Reuse of Public Data/Sample Information | Active |
| gnps-quickstart.ucsd.edu | GNPS Quickstart Server | Active |
| gnps-cytoscape.ucsd.edu | GNPS Cytoscape Export/Styling Server | Active |
| masst.ucsd.edu | GNPS MASST Query Server | Active |