maxtools

Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers

Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
lib		lib
oneshot		oneshot
test		test
.Rhistory		.Rhistory
.gitignore		.gitignore
10xToTab		10xToTab
LICENSE		LICENSE
README.md		README.md
RunVista		RunVista
bed2apollogff		bed2apollogff
bed2fasta		bed2fasta
bed2fasta-http		bed2fasta-http
bed2gff		bed2gff
bed2pip		bed2pip
bed2vista		bed2vista
bed2wig		bed2wig
bedAnnotateNameOverlap		bedAnnotateNameOverlap
bedAppend		bedAppend
bedBenchmark		bedBenchmark
bedBestTranscript		bedBestTranscript
bedBinSizes		bedBinSizes
bedBlastLift		bedBlastLift
bedChain		bedChain
bedCheckChromSizes		bedCheckChromSizes
bedChromDensity		bedChromDensity
bedCompare		bedCompare
bedCountNames		bedCountNames
bedFilter		bedFilter
bedFindNeighbors		bedFindNeighbors
bedFixBlockOverlaps		bedFixBlockOverlaps
bedGappedToUngapped		bedGappedToUngapped
bedGraphSum		bedGraphSum
bedGraphToBp		bedGraphToBp
bedLenDownstream		bedLenDownstream
bedMoveFeats		bedMoveFeats
bedNameJoin		bedNameJoin
bedNamePickFirst		bedNamePickFirst
bedNameRewrite		bedNameRewrite
bedNameTable		bedNameTable
bedNumberExons		bedNumberExons
bedNumberRecords		bedNumberRecords
bedOverlapAll		bedOverlapAll
bedOverlapCoalesce		bedOverlapCoalesce
bedOverlapOffsetDiagram		bedOverlapOffsetDiagram
bedOverlapOnlyLongest		bedOverlapOnlyLongest
bedOverlapSignificance		bedOverlapSignificance
bedPlot.py		bedPlot.py
bedProject		bedProject
bedRegion		bedRegion
bedRemoveComments		bedRemoveComments
bedRemoveExonOverlapBlocks		bedRemoveExonOverlapBlocks
bedRemoveOverlap		bedRemoveOverlap
bedReplaceName		bedReplaceName
bedSplitOnName		bedSplitOnName
bedTiles		bedTiles
bedToWigCountNames		bedToWigCountNames
bedTotalSize		bedTotalSize
bedUpstream		bedUpstream
bedaddpositionline		bedaddpositionline
bedcluster		bedcluster
bedcombination		bedcombination
bedexplode		bedexplode
bedextend		bedextend
bedfasta2gb		bedfasta2gb
bedfastaextract		bedfastaextract
bedfiltercommon		bedfiltercommon
bedfiltername.old		bedfiltername.old
bedfiltertextname		bedfiltertextname
bedinsertseqname		bedinsertseqname
bedprintfactors		bedprintfactors
bedprojectfasta		bedprojectfasta
bedremovegaps		bedremovegaps
bendit2bed		bendit2bed
bigBedAddHtml		bigBedAddHtml
biomartLongestTranscript		biomartLongestTranscript
biosampleToTab		biosampleToTab
blastAndBed		blastAndBed
blastBestMatches		blastBestMatches
blastBestReciprocalMatches		blastBestReciprocalMatches
blastOnAll		blastOnAll
blastPickBestGenome		blastPickBestGenome
blastPubmed		blastPubmed
blastToBed		blastToBed
catAndIndex		catAndIndex
cbTabToBin		cbTabToBin
chromatin2bed		chromatin2bed
cleanBuild		cleanBuild
common		common
coveredByBed		coveredByBed
craftToTab		craftToTab
crawler.log		crawler.log
cs.fa		cs.fa
csv2html		csv2html
csvconvert		csvconvert
ctToHub		ctToHub
dataToTable		dataToTable
descPageRefHtml		descPageRefHtml
dienstmannToBed		dienstmannToBed
doBacEnds		doBacEnds
doBacEndsc		doBacEndsc

License

maximilianh/maxtools

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