The data frame contains alphda diversity values should be in the following format; diversity values calculated by different methodolgies can be stored in separated columns and called in the plot funcitons.
| index | sample_code | heip_e | season | year | region |
|---|---|---|---|---|---|
| 201501_086.7_110.0_86 | ND0184 | 0.113271 | Winter | 2015 | Off |
| 201402_090.0_090.0_10 | ND0012 | 0.103633 | Winter | 2014 | Off |
| 201607_093.3_110.0_17 | ND0398 | 0.065743 | Summer | 2016 | Off |
| 201604_093.3_026.7_20 | ND0355 | 0.179908 | Spring | 2016 | SCB |
| 201407_086.7_045.0_53 | ND0094 | 0.133548 | Summer | 2014 | Up |
| ... |
beta diversity data are stored in dictionary, with keys as the name of methods used and items as the similarity/distance matrics associated.
| 201501_086.7_110.0_86 | 201402_090.0_090.0_10 | 201607_093.3_110.0_17 | 201604_093.3_026.7_20 | 201407_086.7_045.0_53 | |
|---|---|---|---|---|---|
| 201501_086.7_110.0_86 | 0.000000 | 0.518750 | 0.624583 | 0.781583 | 0.651833 |
| 201402_090.0_090.0_10 | 0.518750 | 0.000000 | 0.480417 | 0.641250 | 0.536583 |
| 201607_093.3_110.0_17 | 0.624583 | 0.480417 | 0.000000 | 0.796750 | 0.761083 |
| 201604_093.3_026.7_20 | 0.781583 | 0.641250 | 0.796750 | 0.000000 | 0.566000 |
| 201407_086.7_045.0_53 | 0.651833 | 0.536583 | 0.761083 | 0.566000 | 0.000000 |
The following interactive plots were generated using the scripts in the jupyter notebook
