retropipe

A pipeline for analysis of retroelement NGS data.

Name		Name	Last commit message	Last commit date
Latest commit History 114 Commits
cluster_synth_table		cluster_synth_table
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
badgood_fastq-Copy3.ipynb		badgood_fastq-Copy3.ipynb
badgood_fastq.ipynb		badgood_fastq.ipynb
badgood_fastq.py		badgood_fastq.py
bcR.py		bcR.py
bigtableR.py		bigtableR.py
bwamemR.py		bwamemR.py
intersectionR.py		intersectionR.py
intersection_fixagctR.py		intersection_fixagctR.py
intersection_retrolineR.py		intersection_retrolineR.py
megatableR.py		megatableR.py
normalisationV1.ipynb		normalisationV1.ipynb
readfromfqR.py		readfromfqR.py
real_bc_from_modelR.py		real_bc_from_modelR.py
samfilterR.py		samfilterR.py
samstatsR.py		samstatsR.py
simple_som_bc_mergeR.py		simple_som_bc_mergeR.py
trimmR.py		trimmR.py
utils.py		utils.py
zalipon_aluR.py		zalipon_aluR.py
zalipon_kmerR.py		zalipon_kmerR.py
zalipon_matrixR.py		zalipon_matrixR.py
zalipon_primerR.py		zalipon_primerR.py

nugaziy/retropipe