Yet another one NGS pipeline runner based on Ansible automation software.
The basic usage is:
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Write your pipeline as Ansible playbook.
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Run it with NGSpyeasy runner
$ ngspyeasy --samples /path/to/samples.config.tsv --vars pipeline_vars.yml pipeline_playbook.yml --log_dir /path/to/log_dir
where samples.config.tsv contains a list of sample configurations your pipeline scripts use. Here is an example:
sample_id fastq1 fatsq2
sample1 sample1_1.fastq.gz sample1_2.fastq.gz
sample2 sample2_1.fastq.gz sample2_2.fastq.gz
sample3 sample3_1.fastq.gz sample3_2.fastq.gz
...