GitHub - pandyark/WES_Pipeline: Whole Exome Pipeline for Germline Variant Calling. It takes Fastq files and process it through multiple analysis tools to generate an annotated VCF file.

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Whole Exome Pipeline for Germline Variant Calling. It takes Fastq files and process it through multiple analysis tools to generate an annotated VCF file.

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
env		env
fastq_to_sam_alignment		fastq_to_sam_alignment
fastqc		fastqc
get_absolute_path		get_absolute_path
multiqc		multiqc
mutliqc_validation		mutliqc_validation
trim_Galore		trim_Galore
utils		utils
variant_calling		variant_calling
app.py		app.py
requirements.txt		requirements.txt
sotware_resource.json		sotware_resource.json

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Whole Exome Pipeline for Germline Variant Calling. It takes Fastq files and process it through multiple analysis tools to generate an annotated VCF file.

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