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Membrane.py
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Membrane.py
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from twisted.web.resource import Resource
from twisted.web.server import NOT_DONE_YET
#from twisted.internet import task, defer
from twisted.internet.defer import Deferred
import collections
from DBPool import dbpool
import json
import datetime
class Membrane(Resource):
isLeaf = True
def getMembraneList(self, request):
def getList():
return dbpool.runQuery("SELECT MembraneID, Name FROM Membranes ORDER BY MembraneID ASC")
def onResult(data):
asList = []
for row in data:
asList.append( tuple(row) )
request.write( json.dumps( asList ) )
request.finish()
d = getList()
d.addCallback(onResult)
def getMembraneDetail(self, request, membraneID):
def getDetail():
return dbpool.runQuery("SELECT * FROM Membranes WHERE MembraneID = ?", (membraneID,) )
def onResult(data):
row = data[0]
request.write( json.dumps( collections.OrderedDict(zip(row.keys(), row)) ) )
request.finish()
d = getDetail()
d.addCallback(onResult)
def render_GET(self, request):
print "Received a GET request for Membrane"
print "request.args:",request.args
request.setHeader("Content-Type","application/json");
if "membraneID" in request.args:
membraneID = int(request.args["membraneID"][0])
self.getMembraneDetail(request, membraneID)
else:
self.getMembraneList(request)
return NOT_DONE_YET
def getMembraneArgs(self, request):
args = {}
if "MembraneID" in request.args:
args["membraneID"] = int(request.args["MembraneID"][0])
args["name"] = request.args["Name"][0]
args["description"] = request.args["Description"][0]
args["mwco"] = int(request.args["MWCO"][0])
args["surfaceArea"] = float(request.args["SurfaceArea"][0])
if "Retired" in request.args and request.args["Retired"][0] == '1':
args["retired"] = True
else:
args["retired"] = False
args["maxInletPressure"] = float(request.args["MaxInletPressure"][0])
args["maxAlongMembranePressure"] = float(request.args["MaxAlongMembranePressure"][0])
args["maxTransMembranePressure"] = float(request.args["MaxTransMembranePressure"][0])
args["maxBackPressure"] = float(request.args["MaxBackPressure"][0])
args["minTemperature"] = float(request.args["MinTemperature"][0])
args["maxTemperature"] = float(request.args["MaxTemperature"][0])
args["minPH"] = float(request.args["MinPH"][0])
args["maxPH"] = float(request.args["MaxPH"][0])
return args
def sanityCheckMembraneArgs(self, args):
# Sanity check data
error = None
if len(args["name"]) < 1:
error = "A name must be provided"
if args["mwco"] <= 0:
error = "Molecular weight cut-off (MWCO) must be positive"
if (args["maxInletPressure"] < 0
or args["maxAlongMembranePressure"] < 0
or args["maxTransMembranePressure"] < 0
or args["maxBackPressure"] < 0):
error = "Pressures must be positive"
if args["minTemperature"] >= args["maxTemperature"]:
error = "Minimum temperature must be below the maximum temperature"
if args["minPH"] >= args["maxPH"]:
error = "Minimum pH must be below the maximum pH"
return error
def addMembrane(self, request):
# Add membrane to the database if possible
print "Adding membrane to database"
def add(request):
print "starting add()"
try:
args = self.getMembraneArgs(request)
except KeyError:
# Failed to correctly supply all arguments
d = Deferred()
d.errback(Exception("Invalid request; not all required arguments were supplied"))
return d
except ValueError:
# Failed to correctly supply all arguments
d = Deferred()
d.errback(Exception("Invalid data: the molecular weight cut-off must be an integer, and the pressures, temperatures, and pHs must be real numbers."))
return d
# Sanity check data
print "staring sanity check"
error = self.sanityCheckMembraneArgs(args)
# Fail if sanity checks failed
if error is not None:
d = Deferred()
d.errback(Exception(error))
return d
# Write data into the database
def writeToDatabase(cursor):
print "requesting membranes table"
cursor.execute("SELECT * FROM Membranes WHERE Name = ?", (args["name"],) )
print "checking if there are any matching names"
if cursor.fetchone() is not None:
raise Exception("A membrane named '"+args["name"]+"' already exists in the database")
print "inserting membrane data"
cursor.execute("INSERT INTO Membranes(Name, Description, MWCO, SurfaceArea, Retired, MaxInletPressure, MaxAlongMembranePressure, MaxTransMembranePressure, MaxBackPressure, MinTemperature, MaxTemperature, MinPH, MaxPH) VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?)", (args["name"], args["description"], args["mwco"], args["surfaceArea"], args["retired"], args["maxInletPressure"], args["maxAlongMembranePressure"], args["maxTransMembranePressure"], args["maxBackPressure"], args["minTemperature"], args["maxTemperature"], args["minPH"], args["maxPH"]))
print "done"
print "writing to database"
return dbpool.runInteraction(writeToDatabase)
def onResult(data):
print "Success: wrote to database"
result = { "result": "ok" }
json_result = json.dumps(result)
request.write(str(json_result))
request.finish()
def onError(data):
message = "Failed to add membrane to the database. "+data.value.message
result = { "result": "error",
"message": message }
json_result = json.dumps(result)
print "Failed to write to database: ",json_result
request.write(str(json_result))
request.finish()
d = add(request)
d.addCallback(onResult)
d.addErrback(onError)
def editMembrane(self, request):
# Edit membrane already in the databas
print "Editing membrane in database"
def edit():
try:
args = self.getMembraneArgs(request)
except KeyError:
# Failed to correctly supply all arguments
d = Deferred()
d.errback(Exception("Invalid request; not all required arguments were supplied"))
return d
except ValueError:
# Failed to correctly supply all arguments
d = Deferred()
d.errback(Exception("Invalid data: the molecular weight cut-off must be an integer, and the pressures, temperatures, and pHs must be real numbers."))
return d
# Sanity check data
error = self.sanityCheckMembraneArgs(args)
# Fail if sanity checks failed
if error is not None:
d = Deferred()
d.errback(Exception(error))
return d
# Edit data in database
def writeToDatabase(cursor):
print "testing to see if the membrane id exists"
cursor.execute("SELECT * FROM Membranes WHERE MembraneID = ?", (args["membraneID"],) )
if cursor.fetchone() is None:
raise Exception("The MembraneID '"+str(args["membraneID"])+"' does not exist in the database")
print "attempting to update db"
cursor.execute("UPDATE Membranes SET Name=?, Description=?, MWCO=?, SurfaceArea=?, Retired=?, MaxInletPressure=?, MaxAlongMembranePressure=?, MaxTransMembranePressure=?, MaxBackPressure=?, MinTemperature=?, MaxTemperature=?, MinPH=?, MaxPH=? WHERE MembraneID = ?", (args["name"], args["description"], args["mwco"], args["surfaceArea"], args["retired"], args["maxInletPressure"], args["maxAlongMembranePressure"], args["maxTransMembranePressure"], args["maxBackPressure"], args["minTemperature"], args["maxTemperature"], args["minPH"], args["maxPH"], args["membraneID"]))
print "calling writeToDatabase"
return dbpool.runInteraction(writeToDatabase)
def onResult(data):
print "Success: wrote to database"
result = { "result": "ok" }
json_result = json.dumps(result)
request.write(str(json_result))
request.finish()
def onError(data):
message = "Failed to edit membrane. "+data.value.message
result = { "result": "error",
"message": message }
json_result = json.dumps(result)
print "Failed to write to database: ",json_result
request.write(str(json_result))
request.finish()
d = edit()
d.addCallback(onResult)
d.addErrback(onError)
def render_POST(self, request):
print "Received POST request for Membrane"
request.setHeader("Content-Type","application/json");
#request.setHeader("Content-Type","text/plain");
if "MembraneID" in request.args:
# We have a MembraneID, so this is an edit
self.editMembrane(request)
else:
# No MembraneID, so add a new membrane
self.addMembrane(request)
return NOT_DONE_YET