General needs for the tools to work:

python3 installed. Best option is to have conda version installed.

Most important dependencies:

pandas: conda install pandas
numpy: conda install numpy

##Installation of this repository##

Install this repository (in develop mode) as follows:

pip install -e .

After the installation you will have a series of comands available, all with a prefix according to their role:

rna-trimandalign exon-bcbio exon-copywriter exon-sciclone

In order to pull this repository please follow,

git pull git@github.com:ranijames/Big-data_analysis.git