GitHub - raphael-upmc/proteinCluster: some useful scripts

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 168 Commits
utils		utils
16RP.py		16RP.py
16RP_v2.py		16RP_v2.py
annotation.py		annotation.py
binary4itol.py		binary4itol.py
cath-resolve-hits.ubuntu14.04		cath-resolve-hits.ubuntu14.04
cluster2fasta.py		cluster2fasta.py
clustergrammer.js		clustergrammer.js
clustergrammerHeatmap.py		clustergrammerHeatmap.py
clustergrammer_light.ipynb		clustergrammer_light.ipynb
clustergrammer_model.html		clustergrammer_model.html
colorstrip4itol.py		colorstrip4itol.py
creatingAnnotationStructure.py		creatingAnnotationStructure.py
creatingHhblitsDb.py		creatingHhblitsDb.py
creatingSubnetwork.py		creatingSubnetwork.py
dbCAN2.py		dbCAN2.py
detectingSystemInGTDB.py		detectingSystemInGTDB.py
domainsHitFile.py		domainsHitFile.py
downloadingNcbiAssemblies.py		downloadingNcbiAssemblies.py
extractingGenbank.py		extractingGenbank.py
extractingGenomicContext.py		extractingGenomicContext.py
families2fasta.py		families2fasta.py
family2taxonomy.py		family2taxonomy.py
fromFasta2phylogeneticTree.py		fromFasta2phylogeneticTree.py
fromHmmsearchOutput2genomicContext.py		fromHmmsearchOutput2genomicContext.py
genomicContext.py		genomicContext.py
genomicDiagram.py		genomicDiagram.py
gi2taxonomy.py		gi2taxonomy.py
load_viz_new.js		load_viz_new.js
multibar4itol.py		multibar4itol.py
ncbiTaxId2lineage.py		ncbiTaxId2lineage.py
parsingDamaOuput.py		parsingDamaOuput.py
parsingKeggHmm.py		parsingKeggHmm.py
prodigal.py		prodigal.py
psort.py		psort.py
runningAntismash4.py		runningAntismash4.py
runningHHpred.py		runningHHpred.py
runningHmmsearchOnGgkbase.py		runningHmmsearchOnGgkbase.py
runningPRISM.py		runningPRISM.py
signalP.py		signalP.py
simplebar4itol.py		simplebar4itol.py
splitingFasta.py		splitingFasta.py
splittingHeatmapIntoModule.py		splittingHeatmapIntoModule.py
splittingScaffold2bin.py		splittingScaffold2bin.py
tcdb.py		tcdb.py