Package for handling QSAR data.
A dump of the database is available from GitHub Large File Storage. To get it,
install git-lfs
from packagecloud.io.
Create a postgresql database called qsardb
(this will require being run as a
superuser. By default, the postgres user):
createuser qsar
createdb qsardb --owner qsar
Migrate:
alembic upgrade head
Set up a ChEMBL postresql database.
Then grant SELECT privileges for the qsar user:
psql chembl_{version} -c'GRANT SELECT ON ALL TABLES IN SCHEMA public TO qsar;'
Finally, use the ChEMBL loader script:
python -m qsardb.data.chembl