Australia National University

Welcome to the GitHub repository for the clinical NLP mater course at ANU.

The notebooks assume that you are using the Jupyterhub environment at the University of Utah.

If you have been added to the environment, do the following steps:

With your favorite web browser, go to jupyterhub.med.utah.edu
Authenticate with GitHub
Open a new terminal
Clone the repository with the command git clone https://github.com/uudbmi/anu_clinical_nlp.git
If you have already cloned the repository and want to get the updated code, cd to the directory with the command cd anu_clinical_nlp and execute the command git pull
If you get a conflict message, you may need to discard the changes you have made by using the following command: git checkout -- .
Now back in your home page, click on the anu_clinical_nlp folder and open the ROADMAP.ipynb file.

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
KB		KB
data		data
media		media
00_browing_reports.ipynb		00_browing_reports.ipynb
01_NLP_Annotations.ipynb		01_NLP_Annotations.ipynb
02_You_be_the_nlp_algorithm.ipynb		02_You_be_the_nlp_algorithm.ipynb
03_ConTet_algorithm.ipynb		03_ConTet_algorithm.ipynb
04_NLP_pneumonia_pyConText_targets_and_modifiers.ipynb		04_NLP_pneumonia_pyConText_targets_and_modifiers.ipynb
05_NLP_Project_Template.ipynb		05_NLP_Project_Template.ipynb
05_NLP_Project_Template_v2.ipynb		05_NLP_Project_Template_v2.ipynb
Chapman_NLP_Difficult_Short.pdf		Chapman_NLP_Difficult_Short.pdf
Chapman_NLP_Tutorial-Report-Answers-notebooks.pdf		Chapman_NLP_Tutorial-Report-Answers-notebooks.pdf
N1_Introduction.ipynb		N1_Introduction.ipynb
NegEx-ConText-Short.pdf		NegEx-ConText-Short.pdf
README.md		README.md
edit_yaml_file.png		edit_yaml_file.png
more_utils.py		more_utils.py
nlp_pneumonia_utils.py		nlp_pneumonia_utils.py
opening_files.png		opening_files.png
select_yaml_file.png		select_yaml_file.png

ryannetwork/anu_masterclass