Diffuse is a BrainVISA toolbox designed to process diffusion-weighted MRI (DWI) data with state-of-the-art algorithms in a user-friendly way. Diffuse is currently developed at the Institut de Neurosciences de la Timone (INT), Marseille, France by both MeCA and SCaLP research teams. Diffuse mainly relies on FSL and Dipy for DWI processing.

• diffusion data management (DICOM, nifti) within a database and diffusion gradient directions reorientation.
• diffusion data denoising
• movement, susceptibility and eddy current induced distorsions correction
• registration with subject structural space and maps creation stemming from structural data.
• diffusion local modeling (DTI, CSD).
• multiple seeding strategies
• tractography: both deterministic and probabilistic local tractography, particle filtering tractography.

To install Diffuse please refer to the installation guide

The source code of this work is placed under the CeCILL licence (see license.txt).

Copying and distribution of this file, with or without modification, are permitted in any medium without royalty provided the copyright notice and this notice are preserved. This file is offered as-is, without any warranty.

• Lucile BRUN <lucile.brun@univ-amu.fr>.

• Alexandre PRON <alexandre.pron@univ-amu.fr>.