Project

Scripts for all projects and some pipeline mainly for CHO

Modules:

Folder includes all the basic commands of all tools,i.e, aligner, samtools, picard.

Are pipeline built by using different combination of functions in folder Modules.

Name		Name	Last commit message	Last commit date
Latest commit History 76 Commits
CHOGeneId2HumanId		CHOGeneId2HumanId
DE_pipeline		DE_pipeline
DNA_repair		DNA_repair
DetectContamination		DetectContamination
DetectVirus		DetectVirus
DetectVirusPipeline		DetectVirusPipeline
DiffExpression		DiffExpression
DreamChallenge		DreamChallenge
Human_GATK_vari_call		Human_GATK_vari_call
Modules		Modules
Proteogenomics		Proteogenomics
RibosomeProfilePipeline		RibosomeProfilePipeline
VariantCall		VariantCall
.project		.project
.pydevproject		.pydevproject
GlycoKO.py		GlycoKO.py
LICENSE.md		LICENSE.md
Parameters.txt		Parameters.txt
README.md		README.md
bear_app.ipynb		bear_app.ipynb
copy_fq_run_pipeline.py		copy_fq_run_pipeline.py
inter.fa		inter.fa
nothing.py		nothing.py
snpEff_genes.txt		snpEff_genes.txt