CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. More information can be found in the CellProfiler Wiki.

Compiled releases for CentOS 6, OS X, and Windows are available from cellprofiler.org/releases.

CellProfiler requires Python 2 and NumPy, the fundamental package for scientific computing with Python. More information about installation from source can be found in the wiki, i.e. for Linux, OS X and Windows PC.

$ pip install --editable git+git@github.com:CellProfiler/CellProfiler.git#egg=cellprofiler

$ pip install numpy
$ git clone https://github.com/CellProfiler/CellProfiler.git
$ cd CellProfiler
$ pip install --editable .