from sequencescape import connect_to_sequencescape, Sample, Study, Library, MultiplexedLibrary, Well

# Classes of models of data in Sequencescape. Each have constructors with named parameters
available_models = [Sample, Study, Library, MultiplexedLibrary, Well]

# Declares a connection to Sequencescape. (Actual network connections are only opened when required)
api = connect_to_sequencescape("mysql://user:@host:3306/database")

# Available for: study, sample, library, multiplexed_library, well
api.sample.get_by_name("sample_name")   # type: List[Sample]
api.sample.get_by_name(["sample_name", "other_sample_name"])   # type: List[Sample]

# Available for: study, sample, library, multiplexed_library, well
api.library.get_by_id(123)   # type: List[Library]
api.library.get_by_id([123, 456])   # type: List[Library]

# Available for: study, sample
api.study.get_by_accession_number("accession_number")   # type: List[Study]
api.study.get_by_accession_number(["accession_number", "other_accession_number"])   # type: List[Study]

# Available for: study, sample, library, multiplexed_library, well
api.sample.get_by_property_value("property", "value")   # type: List[Sample]
api.sample.get_by_property_value("property", ["value", "other_value"])   # type: List[Sample]
api.sample.get_by_property_value([("property", "value"), ("other_property", "other_value")])   # type: List[Sample]

# Available for: study
api.study.get_associated_with_sample(sample)  # type: List[Study]
api.study.get_associated_with_sample([sample_1, sample_2])  # type: List[Study]

# Available for: sample
api.sample.get_associated_with_study(study)  # type: List[Sample]
api.sample.get_associated_with_study([study_1, study_2])  # type: List[Sample]