Schematic of IM-Net architecture for DCIS segmentation and schematic of DRDIN cell detection network.
Images used for training https://github.com/pathdata/HE_Tissue_Segmentation/tree/master/CIS/TrainData
Ground truth images https://github.com/pathdata/HE_Tissue_Segmentation/tree/master/CIS/TrainData/mask
Overlay of groundtruth on the training image https://github.com/pathdata/HE_Tissue_Segmentation/tree/master/CIS/TrainData/overlay
All training data of carcinoma in situ regions that were annotated as a part of the project is made available in this github repository. Training data tiles were anonymised from raw HE image tiles. Request for data access for the Duke samples can be submitted to E.S.H and Y.Y
Data preparation and implementation codes are maintained in this repository and will be periodically updated. Please contact the corresponding authours for future collaboration and any queries regarding the implementation.