def map_alleles(self, mapping, **storage_kwargs):
def f(block, bmapping):
return block.map_alleles(bmapping)
domain = (self, mapping)
out = _chunked.apply(domain, f, **storage_kwargs)
return AlleleCountsChunkedArray(out)
def map_alleles(self, mapping, **storage_kwargs):
def f(block, bmapping):
return block.map_alleles(bmapping, copy=False)
domain = (self, mapping)
out = _chunked.apply(domain, f, **storage_kwargs)
return HaplotypeChunkedArray(out)
def count_alleles_subpops(self, subpops, max_allele=None,
**storage_kwargs):
if max_allele is None:
max_allele = self.max()
def f(block):
return block.count_alleles_subpops(subpops, max_allele=max_allele)
out = _chunked.apply(self, f, create='table', **storage_kwargs)
return AlleleCountsChunkedTable(out)
def count_alleles_subpops(self,
subpops,
max_allele=None,
**storage_kwargs):
if max_allele is None:
max_allele = self.max()
def f(block):
return block.count_alleles_subpops(subpops, max_allele=max_allele)
out = _chunked.apply(self, f, create='table', **storage_kwargs)
return AlleleCountsChunkedTable(out)
def from_packed(packed, **storage_kwargs):
def f(block):
return _ndarray.GenotypeArray.from_packed(block)
out = _chunked.apply(packed, f, **storage_kwargs)
return GenotypeChunkedArray(out)
def map_alleles(self, mapping, **storage_kwargs):
def f(block, bmapping):
return block.map_alleles(bmapping)
domain = (self, mapping)
out = _chunked.apply(domain, f, **storage_kwargs)
return AlleleCountsChunkedArray(out)
def map_alleles(self, mapping, **storage_kwargs):
def f(block, bmapping):
return block.map_alleles(bmapping, copy=False)
domain = (self, mapping)
out = _chunked.apply(domain, f, **storage_kwargs)
return HaplotypeChunkedArray(out)
def from_packed(packed, **storage_kwargs):
def f(block):
return _ndarray.GenotypeArray.from_packed(block)
out = _chunked.apply(packed, f, **storage_kwargs)
return GenotypeChunkedArray(out)