def test_constructor(self):
# missing data arg
with assert_raises(TypeError):
# noinspection PyArgumentList
HaplotypeChunkedArray()
# data has wrong dtype
data = 'foo bar'
with assert_raises(TypeError):
HaplotypeChunkedArray(data)
# data has wrong dtype
data = np.array([4., 5., 3.7])
with assert_raises(TypeError):
HaplotypeChunkedArray(data)
# data has wrong dimensions
data = np.array([1, 2, 3])
with assert_raises(TypeError):
HaplotypeChunkedArray(data)
# data has wrong dimensions
data = np.array([[[1, 2], [3, 4]]]) # use GenotypeCArray instead
with assert_raises(TypeError):
HaplotypeChunkedArray(data)
# typed data (typed)
h = HaplotypeChunkedArray(np.array(haplotype_data, dtype='i1'))
aeq(haplotype_data, h)
eq(np.int8, h.dtype)
def setup_instance(self, data, dtype=None):
data = chunked.storage_registry['default'].array(data, dtype=dtype,
chunklen=2)
return HaplotypeChunkedArray(data)