def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=3., live_thresh=-100., seed_thresh=-80., scale_samples=3, down_sample_rate=1, min_intensity=-200, max_intensity=200): ChestParticles.__init__( self, feature_type="ridge_surface", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._max_scale = max_scale self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._mode_thresh = -0.5 self._population_control_period = 10 self._no_add = 0
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=11, live_thresh=-100., seed_thresh=-80., scale_samples=5, multi_res_levels=2): ChestParticles.__init__( self, feature_type="ridge_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples) self._multi_res_levels = multi_res_levels self._max_intensity = 400 self._min_intensity = -900 self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._mode_thresh = -0.5 self._population_control_period = 10
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=6., live_thresh=40., seed_thresh=30., scale_samples=5, down_sample_rate=1, min_intensity=-1100, max_intensity=-400): ChestParticles.__init__(self, feature_type="valley_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._max_scale = max_scale self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._phase_iterations = [100, 10, 75] self._phase_irads=[1.7,1.15,1.15] self._phase_srads=[1.2,2,4] self._phase_population_control_periods = [6,20,17] self._phase_alphas = [1.0, 0.35, 0.84] self._phase_betas = [0.77, 0.75, 0.57] self._phase_gammas = [0.37, 0.53, 0.57] #Default init self._init_mode = "PerVoxel" self._ppv = 2 self._nss = 2
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=8., live_thresh=45., seed_thresh=45., scale_samples=5, multi_res_levels=2): ChestParticles.__init__(self, feature_type="valley_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples) self._multi_res_levels = multi_res_levels self._max_intensity = -400 self._min_intensity = -1100 self._live_thresh = live_thresh self._seed_thresh = seed_thresh
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=11, live_thresh=-100., seed_thresh=-80., scale_samples=5, multi_res_levels=2): ChestParticles.__init__(self, feature_type="ridge_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples) self._multi_res_levels = multi_res_levels self._max_intensity = 400 self._min_intensity = -900 self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._mode_thresh = -0.5 self._population_control_period = 10
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=6, live_thresh=-95, seed_thresh=-70, scale_samples=10, down_sample_rate=1, min_intensity=-800, max_intensity=400): ChestParticles.__init__( self, feature_type="ridge_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._max_scale = max_scale self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._mode_thresh = -0.3 self._population_control_period = 3 self._phase_iterations = [100, 10, 75] self._phase_irads = [1.5, 1.15, 0.8] self._phase_srads = [1.2, 2, 4] self._phase_population_control_periods = [6, 20, 17] self._phase_alphas = [1.0, 0.35, 0.84] self._phase_betas = [0.77, 0.75, 0.57] self._phase_gammas = [0.37, 0.53, 0.57] #Default init mode self._init_mode = "PerVoxel" self._ppv = 2 self._nss = 2
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=6., live_thresh=-100., seed_thresh=-80., scale_samples=6, down_sample_rate=1, min_intensity=-800, max_intensity=400): ChestParticles.__init__(self, feature_type="ridge_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._mode_thresh = -0.5 self._population_control_period = 6
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=6., live_thresh=50., seed_thresh=40., scale_samples=5, down_sample_rate=1, min_intensity=-1100, max_intensity=-400): ChestParticles.__init__(self, feature_type="valley_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._max_scale = max_scale self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._population_control_period = 6
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=6., live_thresh=-100., seed_thresh=-80., scale_samples=6, down_sample_rate=1, min_intensity=-800, max_intensity=400): ChestParticles.__init__( self, feature_type="ridge_line", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._mode_thresh = -0.5 self._population_control_period = 6 self._iterations_phase1 = 10 self._iterations_phase2 = 20 self._iterations_phase3 = 50 self._irad_phase1 = 1.7 self._irad_phase2 = 1.15 self._irad_phase3 = 1.15 self._srad_phase1 = 1.2 self._srad_phase2 = 2 self._srad_phase3 = 4
def __init__(self, in_file_name, out_particles_file_name, tmp_dir, mask_file_name=None, max_scale=1.2, live_thresh=-30.6, seed_thresh=-30.6, scale_samples=1, down_sample_rate=1, min_intensity=-1000, max_intensity=-500): ChestParticles.__init__(self, feature_type="ridge_surface", in_file_name=in_file_name, out_particles_file_name=out_particles_file_name, tmp_dir=tmp_dir, mask_file_name=mask_file_name, max_scale=max_scale, scale_samples=scale_samples, down_sample_rate=down_sample_rate) self._max_intensity = max_intensity self._min_intensity = min_intensity self._live_thresh = live_thresh self._seed_thresh = seed_thresh self._max_scale = max_scale self._scale_samples = scale_samples self._down_sample_rate = down_sample_rate self._mode_thresh = -0.5 self._population_control_period = 10 self._no_add = 0 self._verbose = 1