def connect(request):
c = Cytomine.connect(request.config.getoption("--host"),
request.config.getoption("--public_key"),
request.config.getoption("--private_key"),
logging.DEBUG)
c.open_admin_session()
return c
from cytomine.cytomine import Cytomine
from cytomine.models.image import ImageInstanceCollection, AbstractImage
from cytomine.models.imagegroup import ImageGroup, ImageSequence, ImageSequenceCollection, ImageGroupHDF5
from cytomine.models.storage import UploadedFile
__author__ = "Rubens Ulysse <*****@*****.**>"
__contributors__ = ["Marée Raphaël <*****@*****.**>"]
__copyright__ = "Copyright 2010-2018 University of Liège, Belgium, http://www.cytomine.be/"
upload = "demo-upload.cytomine.be"
id_storage = 0
project_id = 0
priv = ""
publ = ""
c = Cytomine.connect('demo.cytomine.be', publ, priv)
dir_path = "Rompp-ProteomeXChange2010/ionimages"
onlyfiles = [
f for f in os.listdir(dir_path)
if isfile(os.path.join(dir_path, f)) and f[-4:] == ".png"
]
onlyfiles.sort()
print(onlyfiles)
# Upload files
zstack = {}
t = 0
for file_path in onlyfiles:
print("Upload file {}".format(file_path))
p = os.path.join(dir_path, file_path)