def download(self):
if not os.path.exists(self.contents_file):
print "Error: arXiv contents file %s does not exist" % (self.contents_file)
sys.exit(1)
# Change directory to source folder
os.chdir(self.filedir)
print "Press 'x' to break after the current download."
while True:
arxiv_file_line = fq.get(self.contents_file)
if arxiv_file_line == None:
break
print "Processing ", arxiv_file_line
return_code = call([self.s3_cmd_ex,'get','--add-header=x-amz-request-payer: requester','--skip-existing', arxiv_file_line])
if return_code != 0:
print "Error downloading", arxiv_file_line
break
fq.pop(self.contents_file)
# break if x was pressed
if 'x' in nbRawInput('',timeout=1):
print "Download suspended. Restart script to resume."
break
# Change directory to project current folder
os.chdir(self.current_dir)
def download(self):
if not os.path.exists(self.contents_file):
print "Error: arXiv contents file %s does not exist" % (
self.contents_file)
sys.exit(1)
# Change directory to source folder
os.chdir(self.filedir)
print "Press 'x' to break after the current download."
while True:
arxiv_file_line = fq.get(self.contents_file)
if arxiv_file_line == None:
break
print "Processing ", arxiv_file_line
return_code = call([
self.s3_cmd_ex, 'get',
'--add-header=x-amz-request-payer: requester',
'--skip-existing', arxiv_file_line
])
if return_code != 0:
print "Error downloading", arxiv_file_line
break
fq.pop(self.contents_file)
# break if x was pressed
if 'x' in nbRawInput('', timeout=1):
print "Download suspended. Restart script to resume."
break
# Change directory to project current folder
os.chdir(self.current_dir)
def retrieve_citations(self):
if not os.path.exists(self.tmp_dir):
os.mkdir(self.tmp_dir)
#Creates arXiv_citationqueue.txt if it doesn't exist by finding all the gz files in the extract folder
if not os.path.exists(self.citation_queue):
call('find {source_dir}*.gz -type f > {target_file}'.format(
source_dir=self.extract_dir, target_file=self.citation_queue),
shell=True)
# Initialise some variables
batcher = Batch.Batch()
while True:
file_name = fq.get(self.citation_queue)
if file_name is None: break
arxiv_id = os.path.splitext(os.path.split(file_name)[1])[0]
print "Retrieving citations", arxiv_id
uncompressed_tmp = self.tmp_dir + arxiv_id
if not os.path.exists(uncompressed_tmp):
os.mkdir(uncompressed_tmp)
returncode = call(
["tar", "xzf", file_name, "-C", uncompressed_tmp])
if (
returncode == 1
): #there was an error, so perhaps its not a Tar file. Instead try to decompress with plain old gunzip
print "trying to gunzip instead for " + file_name
os.system("gunzip -c %s > %s" %
(file_name, uncompressed_tmp + "/file.tex"))
#Now process .tex files
for tex_file_name in os.listdir(uncompressed_tmp):
if not (tex_file_name.endswith('.tex')
or tex_file_name.endswith('.bbl')):
continue
citations = self.settings["metadata_reader"].process(
arxiv_id, uncompressed_tmp + '/' + tex_file_name)
#Store the citations in BibServer
self.store_citations(batcher, arxiv_id, citations)
#print "CITATIONS for " + arxiv_id
#print citations
# Delete temporary files
if call('rm -R ' + uncompressed_tmp + '*', shell=True):
break
fq.pop(self.citation_queue)
batcher.clear()
def retrieve_citations(self):
if not os.path.exists(self.tmp_dir):
os.mkdir(self.tmp_dir)
#Creates arXiv_citationqueue.txt if it doesn't exist by finding all the gz files in the extract folder
if not os.path.exists(self.citation_queue):
call('find {source_dir}*.gz -type f > {target_file}'.format(
source_dir = self.extract_dir,
target_file = self.citation_queue
) , shell = True)
# Initialise some variables
batcher = Batch.Batch()
while True:
file_name = fq.get(self.citation_queue)
if file_name is None: break
arxiv_id = os.path.splitext(os.path.split(file_name)[1])[0]
print "Retrieving citations", arxiv_id
uncompressed_tmp = self.tmp_dir + arxiv_id
if not os.path.exists(uncompressed_tmp):
os.mkdir(uncompressed_tmp)
returncode = call(["tar", "xzf", file_name, "-C", uncompressed_tmp])
if (returncode == 1): #there was an error, so perhaps its not a Tar file. Instead try to decompress with plain old gunzip
print "trying to gunzip instead for " + file_name
os.system("gunzip -c %s > %s" % (file_name, uncompressed_tmp + "/file.tex"))
#Now process .tex files
for tex_file_name in os.listdir(uncompressed_tmp):
if not (tex_file_name.endswith('.tex') or tex_file_name.endswith('.bbl')): continue
citations = self.settings["metadata_reader"].process(arxiv_id, uncompressed_tmp + '/' + tex_file_name)
#Store the citations in BibServer
self.store_citations(batcher, arxiv_id, citations)
#print "CITATIONS for " + arxiv_id
#print citations
# Delete temporary files
if call('rm -R ' + uncompressed_tmp + '*', shell=True):
break
fq.pop(self.citation_queue)
batcher.clear()
def main():
print 'Press "x" to break'
if not os.path.exists(tmp_dir):
os.mkdir(tmp_dir)
if not os.path.exists(extract_dir):
os.mkdir(extract_dir)
if not os.path.exists(extraction_queue) or not RESUME:
call('find {source_dir} -type f > {target_file}'.format(
source_dir = bucket_dir,
target_file = extraction_queue
) , shell = True)
while True:
file_name = fq.get(extraction_queue)
if file_name is None: break
print "Extracting bucket" , file_name
if call(['tar','xf',file_name,'-C',tmp_dir]):
# call returns 1 on error.
break
if call('find %s -name *.gz -type f -exec mv {} %s \;' % (tmp_dir, extract_dir), shell = True):
break
if call('rm -R ' + tmp_dir + '*', shell=True):
break
fq.pop(extraction_queue)
# break if x was pressed
if nbRawInput('',timeout=1) == 'x':
print "Extraction suspended. Restart script to resume."
break
def main():
print 'Press "x" to break'
if not os.path.exists(tmp_dir):
os.mkdir(tmp_dir)
if not os.path.exists(extract_dir):
os.mkdir(extract_dir)
if not os.path.exists(extraction_queue) or not RESUME:
call('find {source_dir} -type f > {target_file}'.format(
source_dir=bucket_dir, target_file=extraction_queue),
shell=True)
while True:
file_name = fq.get(extraction_queue)
if file_name is None: break
print "Extracting bucket", file_name
if call(['tar', 'xf', file_name, '-C', tmp_dir]):
# call returns 1 on error.
break
if call('find %s -name *.gz -type f -exec mv {} %s \;' %
(tmp_dir, extract_dir),
shell=True):
break
if call('rm -R ' + tmp_dir + '*', shell=True):
break
fq.pop(extraction_queue)
# break if x was pressed
if nbRawInput('', timeout=1) == 'x':
print "Extraction suspended. Restart script to resume."
break
def extract(self):
print "Press 'x' to interupt the extraction process"
if not os.path.exists(self.tmp_dir):
os.mkdir(self.tmp_dir)
if not os.path.exists(self.extract_dir):
os.mkdir(self.extract_dir)
#Creates arXiv_extraction_queue.txt if it doesn't exist by finding all the tar files in the download folder
if not os.path.exists(self.extraction_queue):
call('find {source_dir}*.tar -type f > {target_file}'.format(
source_dir=self.filedir, target_file=self.extraction_queue),
shell=True)
while True:
file_name = fq.get(self.extraction_queue)
if file_name is None: break
print "Extracting bucket", file_name
if call(['tar', 'xf', file_name, '-C', self.tmp_dir]):
# call returns 1 on error.
break
if call('find %s -name *.gz -type f -exec mv {} %s \;' %
(self.tmp_dir, self.extract_dir),
shell=True):
break
if call('rm -R ' + self.tmp_dir + '*', shell=True):
break
fq.pop(self.extraction_queue)
# break if x was pressed
if nbRawInput('', timeout=1) == 'x':
print "Extraction suspended. Restart script to resume."
break
def extract(self):
print "Press 'x' to interupt the extraction process"
if not os.path.exists(self.tmp_dir):
os.mkdir(self.tmp_dir)
if not os.path.exists(self.extract_dir):
os.mkdir(self.extract_dir)
#Creates arXiv_extraction_queue.txt if it doesn't exist by finding all the tar files in the download folder
if not os.path.exists(self.extraction_queue):
call('find {source_dir}*.tar -type f > {target_file}'.format(
source_dir = self.filedir,
target_file = self.extraction_queue
) , shell = True)
while True:
file_name = fq.get(self.extraction_queue)
if file_name is None: break
print "Extracting bucket" , file_name
if call(['tar','xf',file_name,'-C',self.tmp_dir]):
# call returns 1 on error.
break
if call('find %s -name *.gz -type f -exec mv {} %s \;' % (self.tmp_dir, self.extract_dir), shell = True):
break
if call('rm -R ' + self.tmp_dir + '*', shell=True):
break
fq.pop(self.extraction_queue)
# break if x was pressed
if nbRawInput('',timeout=1) == 'x':
print "Extraction suspended. Restart script to resume."
break
cur_dir = os.getcwd()
contents_file = cur_dir + '/s3_contents.txt'
s3_cmd_ex = cur_dir + "/../tools/s3cmd/s3cmd"
dl_dir = cur_dir + '/../DATA/BUCKETS/'
if not os.path.exists(dl_dir):
os.makedirs(dl_dir)
os.chdir(dl_dir)
print "Press 'x' to suspend after the current download."
while True:
line = fq.get(contents_file)
if line == None:
break
print "Processing ", line
return_code = call([s3_cmd_ex,'get','--add-header=x-amz-request-payer: requester','--skip-existing',line])
if return_code != 0:
print "ERROR downloading", line
break
fq.pop(contents_file)
# break if x was pressed
if 'x' in nbRawInput('',timeout=1):
print "Download suspended. Restart script to resume."
break
s3_cmd_ex = cur_dir + "/../tools/s3cmd/s3cmd"
dl_dir = cur_dir + '/../DATA/BUCKETS/'
if not os.path.exists(dl_dir):
os.makedirs(dl_dir)
os.chdir(dl_dir)
print "Press 'x' to suspend after the current download."
while True:
line = fq.get(contents_file)
if line == None:
break
print "Processing ", line
return_code = call([
s3_cmd_ex, 'get', '--add-header=x-amz-request-payer: requester',
'--skip-existing', line
])
if return_code != 0:
print "ERROR downloading", line
break
fq.pop(contents_file)
# break if x was pressed
if 'x' in nbRawInput('', timeout=1):
print "Download suspended. Restart script to resume."
break