def post(self): user = self.current_user plate_config_id = self.get_argument('plate_configuration') plate_ext_id = self.get_argument('plate_name') spp = SamplePlatingProcess.create( user, PlateConfiguration(plate_config_id), plate_ext_id) self.write({'plate_id': spp.plate.id, 'process_id': spp.id})
def test_get_previously_plated_wells(self): tester = Plate(21) three_plates_list = [Plate(27), Plate(30), Plate(33)] exp = {Well(3073): three_plates_list, Well(3079): three_plates_list, Well(3085): three_plates_list, Well(3091): three_plates_list, Well(3097): three_plates_list, Well(3103): three_plates_list, Well(3121): three_plates_list, Well(3127): three_plates_list, Well(3133): three_plates_list, Well(3139): three_plates_list, Well(3145): three_plates_list, Well(3151): three_plates_list, Well(3169): three_plates_list, Well(3175): three_plates_list, Well(3181): three_plates_list, Well(3187): three_plates_list, Well(3193): three_plates_list, Well(3199): three_plates_list, Well(3217): three_plates_list, Well(3223): three_plates_list, Well(3229): three_plates_list, Well(3235): three_plates_list, Well(3241): three_plates_list, Well(3247): three_plates_list, Well(3265): three_plates_list, Well(3271): three_plates_list, Well(3277): three_plates_list, Well(3283): three_plates_list, Well(3289): three_plates_list, Well(3295): three_plates_list, Well(3313): three_plates_list, Well(3319): three_plates_list, Well(3325): three_plates_list, Well(3331): three_plates_list, Well(3337): three_plates_list, Well(3343): three_plates_list, Well(3361): three_plates_list, Well(3367): three_plates_list, Well(3373): three_plates_list, Well(3379): three_plates_list, Well(3385): three_plates_list, Well(3391): three_plates_list, Well(3409): three_plates_list, Well(3415): three_plates_list, Well(3421): three_plates_list, Well(3427): three_plates_list, Well(3433): three_plates_list, Well(3439): three_plates_list, Well(3457): three_plates_list, Well(3463): three_plates_list, Well(3469): three_plates_list, Well(3475): three_plates_list, Well(3481): three_plates_list, Well(3487): three_plates_list, Well(3505): three_plates_list, Well(3511): three_plates_list, Well(3517): three_plates_list, Well(3523): three_plates_list, Well(3529): three_plates_list, Well(3535): three_plates_list, Well(3553): three_plates_list, Well(3559): three_plates_list, Well(3565): three_plates_list, Well(3571): three_plates_list, Well(3577): three_plates_list, Well(3583): three_plates_list, Well(3601): three_plates_list, Well(3607): three_plates_list, Well(3613): three_plates_list, Well(3619): three_plates_list, Well(3625): three_plates_list} obs = tester.get_previously_plated_wells() self.assertEqual(obs, exp) # Create another plate and put a sample on it that isn't anywhere else spp = SamplePlatingProcess.create( User('*****@*****.**'), PlateConfiguration(1), 'New Plate For Prev') spp.update_well(1, 1, '1.SKM1.640184') obs = spp.plate.get_previously_plated_wells() self.assertEqual(obs, {})
def test_get_previously_plated_wells(self): tester = Plate(21) self.assertEqual(tester.get_previously_plated_wells(), {}) # Create another plate and plate some samples in it spp = SamplePlatingProcess.create( User('*****@*****.**'), PlateConfiguration(1), 'New Plate For Prev') spp.update_well(1, 1, '1.SKD1.640179') exp = {} plate = spp.plate exp[Well(3208)] = [plate] exp[Well(3388)] = [plate] exp[Well(3568)] = [plate] exp[Well(3748)] = [plate] exp[Well(3928)] = [plate] exp[Well(4108)] = [plate] obs = tester.get_previously_plated_wells() self.assertEqual(obs, exp)
def create_sample_plate_process(user, samples): plate_config = PlateConfiguration(1) num_rows = plate_config.num_rows num_cols = plate_config.num_columns sp_process = SamplePlatingProcess.create(user, plate_config, 'Test plate %s' % datetime.now()) # Plate the samples for idx, sample in enumerate(samples): i = int(idx / num_cols) + 1 j = (idx % num_cols) + 1 # Make sure that the user didn't pass more samples than wells if i > num_rows: break sp_process.update_well(i, j, sample) sample_plate = sp_process.plate return sp_process, sample_plate