def cluster(self):
self.pca_reduction = PCA(n_components=self.n_components)
self.pca_reduction.fit(self.data)
self.data = self.pca_reduction.transform(self.data)
self.P, self.mu = self.pca()
self.data = self.data - self.mu
self.data = np.dot(self.data, self.P)
train, test = train_test_split(self.data, test_size=0.2)
self.model = LOPQModel(V=self.v,
M=self.m,
subquantizer_clusters=self.sub)
self.model.fit(train, n_init=1)
for i, e in enumerate(
self.entries): # avoid doing this twice again in searcher
r = self.model.predict(self.data[i])
e['coarse'] = r.coarse
e['fine'] = r.fine
e['index'] = i
self.searcher = LOPQSearcherLMDB(self.model, self.model_lmdb_filename)
if self.test_mode:
self.searcher.add_data(train)
nns = compute_all_neighbors(test, train)
recall, _ = get_recall(self.searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
self.model.V, self.model.M, self.model.subquantizer_clusters,
str(recall))
else:
self.searcher.add_data(self.data)
def experiment(self,data):
train, test = train_test_split(data, test_size=0.1)
print data.shape,train.shape,test.shape
nns = compute_all_neighbors(test, train)
self.fit_model(train)
self.searcher.add_data(self.transform(train))
recall, _ = get_recall(self.searcher, self.transform(test), nns)
print 'Recall (V={}, M={}, subquants={}): {}'.format(self.model.V, self.model.M, self.model.subquantizer_clusters, str(recall))
def test_oxford5k():
random_state = 40
data = load_oxford_data()
train, test = train_test_split(data,
test_size=0.2,
random_state=random_state)
# Compute distance-sorted neighbors in training set for each point in test set
nns = compute_all_neighbors(test, train)
# Fit model
m = LOPQModel(V=16, M=8)
m.fit(train, n_init=1, random_state=random_state)
# Assert correct code computation
assert_equal(m.predict(test[0]),
((3, 2), (14, 164, 83, 49, 185, 29, 196, 250)))
# Assert low number of empty cells
h = get_cell_histogram(train, m)
assert_equal(np.count_nonzero(h == 0), 6)
# Assert true NN recall on test set
searcher = LOPQSearcher(m)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
assert_true(np.all(recall > [0.51, 0.92, 0.97, 0.97]))
# Test partial fitting with just coarse quantizers
m2 = LOPQModel(V=16, M=8, parameters=(m.Cs, None, None, None))
m2.fit(train, n_init=1, random_state=random_state)
searcher = LOPQSearcher(m2)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
assert_true(np.all(recall > [0.51, 0.92, 0.97, 0.97]))
# Test partial fitting with coarse quantizers and rotations
m3 = LOPQModel(V=16, M=8, parameters=(m.Cs, m.Rs, m.mus, None))
m3.fit(train, n_init=1, random_state=random_state)
searcher = LOPQSearcher(m3)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
assert_true(np.all(recall > [0.51, 0.92, 0.97, 0.97]))
def main(input_dir='/Users/aub3/temptest/gtin/',
output_dir="/Users/aub3/temptest/products"):
products = external_indexed.ProductsIndex(path=output_dir)
# products.prepare(input_dir)
products.build_approximate()
data = products.data
# data = load_oxford_data()
print data.shape
pca_reduction = PCA(n_components=32)
pca_reduction.fit(data)
data = pca_reduction.transform(data)
print data.shape
P, mu = pca(data)
data = data - mu
data = np.dot(data, P)
train, test = train_test_split(data, test_size=0.2)
print train.shape, test.shape
nns = compute_all_neighbors(test, train)
m = LOPQModel(V=16, M=8)
m.fit(train, n_init=1)
print "fitted"
searcher = LOPQSearcher(m)
print "adding data"
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
m.V, m.M, m.subquantizer_clusters, str(recall))
m2 = LOPQModel(V=16, M=16, parameters=(m.Cs, None, None, None))
m2.fit(train, n_init=1)
searcher = LOPQSearcher(m2)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
m2.V, m2.M, m2.subquantizer_clusters, str(recall))
m3 = LOPQModel(V=16,
M=8,
subquantizer_clusters=512,
parameters=(m.Cs, m.Rs, m.mus, None))
m3.fit(train, n_init=1)
searcher = LOPQSearcher(m3)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
m3.V, m3.M, m3.subquantizer_clusters, str(recall))
def test_oxford5k():
random_state = 40
data = load_oxford_data()
train, test = train_test_split(data, test_size=0.2, random_state=random_state)
# Compute distance-sorted neighbors in training set for each point in test set
nns = compute_all_neighbors(test, train)
# Fit model
m = LOPQModel(V=16, M=8)
m.fit(train, n_init=1, random_state=random_state)
# Assert correct code computation
assert_equal(m.predict(test[0]), ((3, 2), (14, 164, 83, 49, 185, 29, 196, 250)))
# Assert low number of empty cells
h = get_cell_histogram(train, m)
assert_equal(np.count_nonzero(h == 0), 6)
# Assert true NN recall on test set
searcher = LOPQSearcher(m)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
assert_true(np.all(recall > [0.51, 0.92, 0.97, 0.97]))
# Test partial fitting with just coarse quantizers
m2 = LOPQModel(V=16, M=8, parameters=(m.Cs, None, None, None))
m2.fit(train, n_init=1, random_state=random_state)
searcher = LOPQSearcher(m2)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
assert_true(np.all(recall > [0.51, 0.92, 0.97, 0.97]))
# Test partial fitting with coarse quantizers and rotations
m3 = LOPQModel(V=16, M=8, parameters=(m.Cs, m.Rs, m.mus, None))
m3.fit(train, n_init=1, random_state=random_state)
searcher = LOPQSearcher(m3)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
assert_true(np.all(recall > [0.51, 0.92, 0.97, 0.97]))
def cluster(self):
print self.data.shape
pca_reduction = PCA(n_components=32)
pca_reduction.fit(self.data)
self.data = pca_reduction.transform(self.data)
print self.data.shape
P, mu = self.pca()
self.data = self.data - mu
data = np.dot(self.data, P)
train, test = train_test_split(self.data, test_size=0.2)
print train.shape, test.shape
nns = compute_all_neighbors(test, train)
m = LOPQModel(V=16, M=8)
m.fit(train, n_init=1)
print "fitted"
searcher = LOPQSearcher(m)
print "adding data"
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
m.V, m.M, m.subquantizer_clusters, str(recall))
m2 = LOPQModel(V=16, M=16, parameters=(m.Cs, None, None, None))
m2.fit(train, n_init=1)
searcher = LOPQSearcher(m2)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
m2.V, m2.M, m2.subquantizer_clusters, str(recall))
m3 = LOPQModel(V=16,
M=8,
subquantizer_clusters=512,
parameters=(m.Cs, m.Rs, m.mus, None))
m3.fit(train, n_init=1)
searcher = LOPQSearcher(m3)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (
m3.V, m3.M, m3.subquantizer_clusters, str(recall))
def cluster(self):
self.pca_reduction = PCA(n_components=self.n_components)
self.pca_reduction.fit(self.data)
self.data = self.pca_reduction.transform(self.data)
self.P, self.mu = self.pca()
self.data = self.data - self.mu
self.data = np.dot(self.data,self.P)
train, test = train_test_split(self.data, test_size=0.2)
self.model = LOPQModel(V=self.v, M=self.m, subquantizer_clusters=self.sub)
self.model.fit(train, n_init=1)
for i,e in enumerate(self.entries): # avoid doing this twice again in searcher
r = self.model.predict(self.data[i])
e['coarse'] = r.coarse
e['fine'] = r.fine
e['index'] = i
self.searcher = LOPQSearcherLMDB(self.model,self.model_lmdb_filename)
if self.test_mode:
self.searcher.add_data(train)
nns = compute_all_neighbors(test, train)
recall, _ = get_recall(self.searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (self.model.V, self.model.M, self.model.subquantizer_clusters, str(recall))
else:
self.searcher.add_data(self.data)
def main():
"""
A brief demo script showing how to train various LOPQ models with brief
discussion of trade offs.
"""
# Get the oxford dataset
data = load_oxford_data()
# Compute PCA of oxford dataset. See README in data/oxford for details
# about this dataset.
P, mu = pca(data)
# Mean center and rotate the data; includes dimension permutation.
# It is worthwhile see how this affects recall performance. On this
# dataset, which is already PCA'd from higher dimensional features,
# this additional step to variance balance the dimensions typically
# improves recall@1 by 3-5%. The benefit can be much greater depending
# on the dataset.
data = data - mu
data = np.dot(data, P)
# Create a train and test split. The test split will become
# a set of queries for which we will compute the true nearest neighbors.
train, test = train_test_split(data, test_size=0.2)
# Compute distance-sorted neighbors in training set for each point in test set.
# These will be our groundtruth for recall evaluation.
nns = compute_all_neighbors(test, train)
# Fit model
m = LOPQModel(V=16, M=8)
m.fit(train, n_init=1)
# Note that we didn't specify a random seed for fitting the model, so different
# runs will be different. You may also see a warning that some local projections
# can't be estimated because too few points fall in a cluster. This is ok for the
# purposes of this demo, but you might want to avoid this by increasing the amount
# of training data or decreasing the number of clusters (the V hyperparameter).
# With a model in hand, we can test it's recall. We populate a LOPQSearcher
# instance with data and get recall stats. By default, we will retrieve 1000
# ranked results for each query vector for recall evaluation.
searcher = LOPQSearcher(m)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print('Recall (V=%d, M=%d, subquants=%d): %s' %
(m.V, m.M, m.subquantizer_clusters, str(recall)))
# We can experiment with other hyperparameters without discarding all
# parameters everytime. Here we train a new model that uses the same coarse
# quantizers but a higher number of subquantizers, i.e. we increase M.
m2 = LOPQModel(V=16, M=16, parameters=(m.Cs, None, None, None))
m2.fit(train, n_init=1)
# Let's evaluate again.
searcher = LOPQSearcher(m2)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print('Recall (V=%d, M=%d, subquants=%d): %s' %
(m2.V, m2.M, m2.subquantizer_clusters, str(recall)))
# The recall is probably higher. We got better recall with a finer quantization
# at the expense of more data required for index items.
# We can also hold both coarse quantizers and rotations fixed and see what
# increasing the number of subquantizer clusters does to performance.
m3 = LOPQModel(V=16,
M=8,
subquantizer_clusters=512,
parameters=(m.Cs, m.Rs, m.mus, None))
m3.fit(train, n_init=1)
searcher = LOPQSearcher(m3)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print('Recall (V=%d, M=%d, subquants=%d): %s' %
(m3.V, m3.M, m3.subquantizer_clusters, str(recall)))
def main():
"""
A brief demo script showing how to train various LOPQ models with brief
discussion of trade offs.
"""
# Get the oxford dataset
data = load_oxford_data()
# Compute PCA of oxford dataset. See README in data/oxford for details
# about this dataset.
P, mu = pca(data)
# Mean center and rotate the data; includes dimension permutation.
# It is worthwhile see how this affects recall performance. On this
# dataset, which is already PCA'd from higher dimensional features,
# this additional step to variance balance the dimensions typically
# improves recall@1 by 3-5%. The benefit can be much greater depending
# on the dataset.
data = data - mu
data = np.dot(data, P)
# Create a train and test split. The test split will become
# a set of queries for which we will compute the true nearest neighbors.
train, test = train_test_split(data, test_size=0.2)
# Compute distance-sorted neighbors in training set for each point in test set.
# These will be our groundtruth for recall evaluation.
nns = compute_all_neighbors(test, train)
# Fit model
m = LOPQModel(V=16, M=8)
m.fit(train, n_init=1)
# Note that we didn't specify a random seed for fitting the model, so different
# runs will be different. You may also see a warning that some local projections
# can't be estimated because too few points fall in a cluster. This is ok for the
# purposes of this demo, but you might want to avoid this by increasing the amount
# of training data or decreasing the number of clusters (the V hyperparameter).
# With a model in hand, we can test it's recall. We populate a LOPQSearcher
# instance with data and get recall stats. By default, we will retrieve 1000
# ranked results for each query vector for recall evaluation.
searcher = LOPQSearcher(m)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (m.V, m.M, m.subquantizer_clusters, str(recall))
# We can experiment with other hyperparameters without discarding all
# parameters everytime. Here we train a new model that uses the same coarse
# quantizers but a higher number of subquantizers, i.e. we increase M.
m2 = LOPQModel(V=16, M=16, parameters=(m.Cs, None, None, None))
m2.fit(train, n_init=1)
# Let's evaluate again.
searcher = LOPQSearcher(m2)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (m2.V, m2.M, m2.subquantizer_clusters, str(recall))
# The recall is probably higher. We got better recall with a finer quantization
# at the expense of more data required for index items.
# We can also hold both coarse quantizers and rotations fixed and see what
# increasing the number of subquantizer clusters does to performance.
m3 = LOPQModel(V=16, M=8, subquantizer_clusters=512, parameters=(m.Cs, m.Rs, m.mus, None))
m3.fit(train, n_init=1)
searcher = LOPQSearcher(m3)
searcher.add_data(train)
recall, _ = get_recall(searcher, test, nns)
print 'Recall (V=%d, M=%d, subquants=%d): %s' % (m3.V, m3.M, m3.subquantizer_clusters, str(recall))