def test_seed_below_seafloor(self):
o = OpenOil3D(loglevel=20)
reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() + '14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
o.add_reader([reader_norkyst])
o.fallback_values['land_binary_mask'] = 0
o.fallback_values['x_wind'] = 0
o.fallback_values['y_wind'] = 0
o.fallback_values['x_sea_water_velocity'] = 0
o.fallback_values['y_sea_water_velocity'] = 0
lon = 4.5; lat = 62.0
o.seed_elements(lon, lat, z=-5000, time=reader_norkyst.start_time,
density=1000)
o.set_config('processes:turbulentmixing', True)
o.set_config('turbulentmixing:verticalresolution', 1) # m
o.set_config('turbulentmixing:timestep', 1) # s
o.set_config('input:spill:droplet_diameter_min_subsea', 0.005)
o.set_config('input:spill:droplet_diameter_max_subsea', 0.005)
o.run(steps=3, time_step=300, time_step_output=300)
z, status = o.get_property('z')
self.assertAlmostEqual(z[0,0], -151.7, 1) # Seeded at seafloor depth
self.assertAlmostEqual(z[-1,0], -91.3, 1) # After some rising
def test_droplet_distribution(self):
for droplet_distribution in ['Johansen et al. (2015)',
'Exponential']:
o = OpenOil3D(loglevel=50, weathering_model='noaa')
o.set_config('wave_entrainment:droplet_size_distribution',
droplet_distribution)
o.seed_elements(lon=4.8, lat=60, number=100,
time=datetime.now(), oiltype='SKRUGARD')
o.fallback_values['land_binary_mask'] = 0
o.fallback_values['x_wind'] = 8
o.fallback_values['y_wind'] = 0
o.fallback_values['x_sea_water_velocity'] = 0
o.fallback_values['y_sea_water_velocity'] = .3
o.run(duration=timedelta(hours=1), time_step=1800)
d = o.elements.diameter
# Suspicious, Sintef-param should give larer droplets
if droplet_distribution == 'Exponential':
self.assertAlmostEqual(d.mean(), 0.000849, 2)
elif droplet_distribution == 'Johansen et al. (2015)':
#self.assertAlmostEqual(d.mean(), 0.000072158)
self.assertAlmostEqual(d.mean(), 0.000653, 2)
def test_seed_outside_coverage(self):
"""Test seeding"""
o = OpenOil3D(loglevel=0)
norkyst = reader_netCDF_CF_generic.Reader(
o.test_data_folder() +
'14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
basemap = reader_basemap_landmask.Reader(llcrnrlon=4,
llcrnrlat=60,
urcrnrlon=6,
urcrnrlat=64,
resolution='c',
projection='merc')
o.add_reader([basemap, norkyst])
o.fallback_values['x_wind'] = 0
o.fallback_values['y_wind'] = 0
o.seed_elements(5,
63,
number=5,
time=norkyst.start_time - 24 * timedelta(hours=24))
with self.assertRaises(ValueError):
o.run(steps=3, time_step=timedelta(minutes=15))
def test_seed_above_seafloor(self):
o = OpenOil3D(loglevel=20)
reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() + '14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
o.fallback_values['land_binary_mask'] = 0
o.fallback_values['x_wind'] = 0
o.fallback_values['y_wind'] = 0
o.fallback_values['x_sea_water_velocity'] = 0
o.fallback_values['y_sea_water_velocity'] = 0
o.add_reader([reader_norkyst])
lon = 4.5; lat = 62.0
# Seed elements 50 meters above seafloor:
o.seed_elements(lon, lat, z='seafloor+50', time=reader_norkyst.start_time,
density=1000)
o.set_config('processes:turbulentmixing', True)
o.set_config('turbulentmixing:timestep', 1) # s
o.run(steps=3, time_step=300, time_step_output=300)
#o.plot_property('z')
z, status = o.get_property('z')
self.assertAlmostEqual(z[0,0], -101.7, 1) # Seeded at seafloor depth
self.assertAlmostEqual(z[-1,0], -44.3, 1) # After some rising
def test_seed_below_reader_coverage(self):
o = OpenOil3D(loglevel=0)
reader_norkyst = reader_netCDF_CF_generic.Reader(
o.test_data_folder() +
'14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
o.fallback_values['land_binary_mask'] = 0
o.add_reader([reader_norkyst])
lon = 5.0
lat = 64.0
o.seed_elements(lon,
lat,
z=-350,
time=reader_norkyst.start_time,
density=1000)
#o.set_config('turbulentmixing:TSprofiles', True)
o.set_config('processes:turbulentmixing', True)
o.set_config('turbulentmixing:verticalresolution', 1) # m
o.set_config('turbulentmixing:timestep', 1) # s
o.set_config('input:spill:droplet_diameter_min_subsea', 0.005)
o.set_config('input:spill:droplet_diameter_max_subsea', 0.005)
o.run(steps=3, time_step=300, time_step_output=300)
z, status = o.get_property('z')
self.assertAlmostEqual(z[-1, 0], -307.0, 2) # After some rising
def test_vertical_mixing_plantoil(self):
#######################################################
# 2.5m Hs, 10 mum radius (PlantOil)
# Benchmark test from Jones et al. (2016)
# NB: Entrainment length scale is not varied as in paper
o = OpenOil3D(loglevel=30, weathering_model='default')
o.fallback_values['land_binary_mask'] = 0
o.fallback_values['sea_surface_wave_period_at_variance_spectral_density_maximum'] = 5.8
o.fallback_values['sea_surface_wave_significant_height'] = 2.5
o.fallback_values['x_wind'] = 10
o.fallback_values['y_wind'] = 0
o.fallback_values['x_sea_water_velocity'] = 0
o.fallback_values['y_sea_water_velocity'] = 0
o.seed_elements(4, 60, number=1000, diameter=0.00002, # r = 10 micron
density=865, time=datetime.now(),
entrainment_length_scale=0.01)
o.set_config('turbulentmixing:timestep', 4)
o.run(duration=timedelta(hours=2), time_step_output=900, time_step=900)
#o.plot_property('z')
#o.plot_vertical_distribution()
#o.animation_profile()
# Check minimum depth
self.assertAlmostEqual(o.elements.z.min(), -46.4, 1)
def test_seed_outside_coverage(self):
"""Test seeding"""
o = OpenOil3D(loglevel=0)
norkyst = reader_netCDF_CF_generic.Reader(
o.test_data_folder() +
'14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
landmask = reader_global_landmask.Reader(llcrnrlon=4,
llcrnrlat=60,
urcrnrlon=6,
urcrnrlat=64)
o.add_reader([landmask, norkyst])
o.fallback_values['x_wind'] = 0
o.fallback_values['y_wind'] = 0
o.set_config('seed:oil_type', 'SNORRE B')
o.seed_elements(5,
63,
number=5,
time=norkyst.start_time - 24 * timedelta(hours=24))
# Check that the oiltype is taken from config
self.assertEqual(o.oil_name, o.get_config('seed:oil_type'))
self.assertEqual(o.oil_name, 'SNORRE B')
with self.assertRaises(ValueError):
o.run(steps=3, time_step=timedelta(minutes=15))
def run_opendrift(self):
sys.stdout.write('running OpenDrift')
try:
self.budgetbutton.destroy()
except Exception as e:
print(e)
pass
month = np.int(self.months.index(self.monthvar.get()) + 1)
start_time = datetime(np.int(self.yearvar.get()), month,
np.int(self.datevar.get()),
np.int(self.hourvar.get()),
np.int(self.minutevar.get()))
emonth = np.int(self.months.index(self.emonthvar.get()) + 1)
end_time = datetime(np.int(self.eyearvar.get()), emonth,
np.int(self.edatevar.get()),
np.int(self.ehourvar.get()),
np.int(self.eminutevar.get()))
sys.stdout.flush()
lon = np.float(self.lon.get())
lat = np.float(self.lat.get())
radius = np.float(self.radius.get())
elon = np.float(self.elon.get())
elat = np.float(self.elat.get())
eradius = np.float(self.eradius.get())
if lon != elon or lat != elat or start_time != end_time:
lon = [lon, elon]
lat = [lat, elat]
radius = [radius, eradius]
start_time = [start_time, end_time]
cone = True
else:
cone = False
if self.model.get() == 'Leeway':
o = Leeway(loglevel=0)
for ln, lc in enumerate(self.leewaycategories):
if self.oljetype.get() == lc.strip().replace('>', ''):
print('Leeway object category: ' + lc)
break
o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
objectType=ln + 1)
if self.model.get() == 'OpenOil':
o = OpenOil3D(weathering_model='noaa', loglevel=0)
o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
cone=cone,
oiltype=self.oljetype.get())
o.add_readers_from_file(o.test_data_folder() +
'../../opendrift/scripts/data_sources.txt')
o.set_config('general:basemap_resolution', 'h')
time_step = 1800 # Half hour
duration = int(self.durationhours.get()) * 3600 / time_step
if self.directionvar.get() == 'backwards':
time_step = -time_step
if self.has_diana is True:
extra_args = {
'outfile':
self.outputdir + '/opendrift_' + self.model.get() +
o.start_time.strftime('_%Y%m%d_%H%M.nc')
}
else:
extra_args = {}
mapres = self.mapresvar.get()[0]
o.set_config('general:basemap_resolution', mapres)
o.run(steps=duration,
time_step=time_step,
time_step_output=time_step,
**extra_args)
print(o)
if self.has_diana is True:
diana_filename = self.dianadir + '/opendrift_' + \
self.model.get() + o.start_time.strftime(
'_%Y%m%d_%H%M.nc')
o.write_netcdf_density_map(diana_filename)
tk.Button(self.master,
text='Show in Diana',
command=lambda: os.system('diana &')).grid(row=8,
column=2,
sticky=tk.W,
pady=4)
tk.Button(self.master, text='Animation',
command=o.animation).grid(row=8,
column=3,
sticky=tk.W,
pady=4)
if self.model.get() == 'OpenOil':
self.budgetbutton = tk.Button(self.master,
text='Oil Budget',
command=o.plot_oil_budget)
self.budgetbutton.grid(row=8, column=4, sticky=tk.W, pady=4)
import matplotlib.pyplot as plt
import numpy as np
from opendrift.models.openoil3D import OpenOil3D
number = 10000
timestep = timedelta(minutes=10)
timestep_output = timedelta(minutes=60)
duration = timedelta(hours=20)
mass_oil = 2000 # mass oil per particle
oiltype = '*GENERIC DIESEL'
#oiltype = '*GENERIC BUNKER C'
####################################################
# First run, where surface oil thickness is updated
####################################################
o1 = OpenOil3D(loglevel=30, weathering_model='noaa')
# Northwards wind, eastwards current
o1.fallback_values['land_binary_mask'] = 0
o1.fallback_values['x_wind'] = 0
o1.fallback_values['y_wind'] = 7
o1.fallback_values['sea_surface_wave_stokes_drift_x_velocity'] = 0
o1.fallback_values['sea_surface_wave_stokes_drift_y_velocity'] = .3
o1.fallback_values['x_sea_water_velocity'] = .1
o1.fallback_values['y_sea_water_velocity'] = 0
# Using Johansen droplet spectrum, which depends on oil film thickness
o1.set_config('wave_entrainment:droplet_size_distribution',
'Johansen et al. (2015)')
o1.set_config('drift:wind_uncertainty', 2)
o1.set_config('drift:current_uncertainty', .1)
o1.set_config('processes:dispersion', False)
o1.set_config('processes:update_oilfilm_thickness', True)
print('\n')
print('Test 1: generation of landmask instance at full resolution')
print(' 54.0 seconds on reference machine.')
start_time = datetime.now()
reader_landmask = reader_global_landmask.Reader(llcrnrlon=5,
llcrnrlat=59.8,
urcrnrlon=5.5,
urcrnrlat=60.3)
time_spent = datetime.now() - start_time
print('%6.1f seconds on this machine' % time_spent.total_seconds())
print('------------------------------------------------')
print('Test 2: Reading from netCDF file')
print(' 0.05 seconds on reference machine.')
o = OpenOil3D(loglevel=50) # Quiet
reader_arctic = reader_netCDF_CF_generic.Reader(
o.test_data_folder() + '2Feb2016_Nordic_sigma_3d/Arctic20_1to5Feb_2016.nc')
x = reader_arctic.x[10:12]
y = reader_arctic.y[10:12]
z = np.array([-20, -10])
variables = [
'sea_surface_elevation', 'sea_ice_area_fraction',
'barotropic_sea_water_x_velocity', 'y_sea_water_velocity',
'sea_floor_depth_below_sea_level', 'sea_water_salinity',
'x_sea_water_velocity', 'barotropic_sea_water_y_velocity',
'sea_water_temperature', 'sea_ice_thickness'
]
reader_arctic.buffer = 1000 # read all
reader_arctic.verticalbuffer = 1000 # read all
start_time = datetime.now()
#!/usr/bin/env python """ Oil budget (NOAA) ================================== """ from datetime import datetime from opendrift.readers import reader_netCDF_CF_generic from opendrift.models.openoil3D import OpenOil3D o = OpenOil3D(loglevel=20, weathering_model='noaa') # Using constand wind and current #o.fallback_values['x_wind'] = 7 #o.fallback_values['x_sea_water_velocity'] = .7 #o.fallback_values['y_sea_water_velocity'] = .3 #o.fallback_values['land_binary_mask'] = 0 # Arome atmospheric model reader_arome = reader_netCDF_CF_generic.Reader(o.test_data_folder() + '16Nov2015_NorKyst_z_surface/arome_subset_16Nov2015.nc') # Norkyst ocean model reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() + '16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc') o.add_reader([reader_arome, reader_norkyst]) #%% # Seeding some particles #oiltype='GULLFAKS, EXXON' #oiltype='ALGERIAN CONDENSATE' oiltype='MARTIN LINGE CRUDE 2016' o.seed_elements(lon=4.88, lat=60.1, z=0, radius=3000, number=500,
def run_opendrift(self):
sys.stdout.write('running OpenDrift')
try:
self.budgetbutton.destroy()
except Exception as e:
print(e)
pass
month = np.int(self.months.index(self.monthvar.get()) + 1)
start_time = datetime(np.int(self.yearvar.get()), month,
np.int(self.datevar.get()),
np.int(self.hourvar.get()),
np.int(self.minutevar.get()))
emonth = np.int(self.months.index(self.emonthvar.get()) + 1)
end_time = datetime(np.int(self.eyearvar.get()), emonth,
np.int(self.edatevar.get()),
np.int(self.ehourvar.get()),
np.int(self.eminutevar.get()))
sys.stdout.flush()
lon = np.float(self.lon.get())
lat = np.float(self.lat.get())
radius = np.float(self.radius.get())
elon = np.float(self.elon.get())
elat = np.float(self.elat.get())
eradius = np.float(self.eradius.get())
if lon != elon or lat != elat or start_time != end_time:
lon = [lon, elon]
lat = [lat, elat]
radius = [radius, eradius]
start_time = [start_time, end_time]
cone = True
else:
cone = False
if self.model.get() == 'Leeway':
self.o = Leeway(loglevel=0)
#for ln, lc in enumerate(self.leewaycategories):
# if self.oljetype.get() == lc.strip().replace('>', ''):
# print('Leeway object category: ' + lc)
# break
#extra_seed_args = {'objectType': ln + 1}
elif self.model.get() == 'OpenOil':
self.o = OpenOil3D(weathering_model='noaa', loglevel=0)
#extra_seed_args = {'oiltype': self.oljetype.get()}
elif self.model.get() == 'ShipDrift':
self.o = ShipDrift(loglevel=0)
extra_seed_args = {}
for se in self.seed_input:
if se == 'ocean_only':
continue # To be fixed/removed
val = self.seed_input[se].get()
try:
extra_seed_args[se] = np.float(val)
except:
extra_seed_args[se] = val
self.o.set_config('seed:' + se, val)
if 'object_type' in extra_seed_args:
extra_seed_args['objectType'] = extra_seed_args['object_type']
del extra_seed_args['object_type']
extra_seed_args = {}
self.o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
cone=cone,
**extra_seed_args)
self.o.add_readers_from_file(
self.o.test_data_folder() +
'../../opendrift/scripts/data_sources.txt')
#time_step = o.get_config('general:time_step_minutes')*60
time_step = 900 # 15 minutes
time_step_output = timedelta(minutes=30)
duration = int(self.durationhours.get()) * 3600 / time_step
if self.directionvar.get() == 'backwards':
time_step = -time_step
if self.has_diana is True:
extra_args = {
'outfile':
self.outputdir + '/opendrift_' + self.model.get() +
self.o.start_time.strftime('_%Y%m%d_%H%M.nc')
}
else:
extra_args = {}
mapres = self.mapresvar.get()[0]
self.o.set_config('general:basemap_resolution', mapres)
self.simulationname = 'opendrift_' + self.model.get() + \
self.o.start_time.strftime('_%Y%m%d_%H%M')
# Starting simulation run
self.o.run(steps=duration,
time_step=time_step,
time_step_output=time_step_output,
**extra_args)
print(self.o)
self.results.destroy()
self.results = tk.Frame(self.seed,
bd=2,
relief=tk.FLAT,
padx=5,
pady=0)
self.results.grid(row=7, column=3, columnspan=1, sticky='ew')
tk.Button(self.results,
text='Show animation',
command=lambda: self.handle_result('showanimation')).grid(
row=1, column=1)
tk.Button(self.results,
text='Save animation',
command=lambda: self.handle_result('saveanimation')).grid(
row=2, column=1)
tk.Button(self.results,
text='Show plot',
command=lambda: self.handle_result('showplot')).grid(
row=3, column=1)
tk.Button(self.results,
text='Save plot',
command=lambda: self.handle_result('saveplot')).grid(
row=4, column=1)
if self.model.get() == 'OpenOil':
tk.Button(
self.results,
text='Save oil budget',
command=lambda: self.handle_result('saveoilbudget')).grid(
row=5, column=1)
tk.Button(
self.results,
text='Show oil budget',
command=lambda: self.handle_result('showoilbudget')).grid(
row=6, column=1)
if self.has_diana is True:
diana_filename = self.dianadir + self.simulationname + '.nc'
self.o.write_netcdf_density_map(diana_filename)
tk.Button(self.results,
text='Show in Diana',
command=lambda: os.system('diana &')).grid(row=8,
column=1)
def test_vertical_mixing(self):
"""Testing vertical mixing scheme
The OpenOil3D model is run with various wind speeds,
oil droplet diameters and time steps.
The maximum depth of the particles is checked for sanity."""
########################################################
# No wind/waves (i.e. no mixing)
o = OpenOil3D(loglevel=20, weathering_model='default')
o.fallback_values['land_binary_mask'] = 0
o.seed_elements(4, 60, number=100, time=datetime.now())
o.set_config('turbulentmixing:timestep', 5)
o.run(steps=4 * 2, time_step_output=3600, time_step=900)
self.assertEqual(o.elements.z.min(), 0) # No entrainment
########################################################
########################################################
## 2.5m Hs, 50 mum droplet radius (Oil Emulsion)
## Benchmark test from Jones et al. (2016)
## NB: Entrainment length scale is not varied as in paper
## entrainment_length_scale (L)
## L = 0.01 for Plant oil, and L = 0.1 for Emulsion
#o = OpenOil3D(loglevel=0, weathering_model='default')
#o.fallback_values['land_binary_mask'] = 0
#o.fallback_values['sea_surface_wave_period_at_variance_spectral_density_maximum'] = 5.8
#o.fallback_values['sea_surface_wave_significant_height'] = 2.5
#o.seed_elements(4, 60, number=1000, diameter=0.0001, # r = 50 micron
# density=865, time=datetime.now())
#o.set_config('turbulentmixing:verticalresolution', 2)
#o.set_config('turbulentmixing:timestep', 4)
#o.run(duration=timedelta(hours=2), time_step_output=900, time_step=900)
##o.plot_property('z')
##o.plot_vertical_distribution()
##o.animation_profile()
## Check minimum depth
#self.assertAlmostEqual(o.elements.z.min(), -46.0, 1)
########################################################
#######################################################
# 2.5m Hs, 10 mum radius (PlantOil)
# Benchmark test from Jones et al. (2016)
# NB: Entrainment length scale is not varied as in paper
o = OpenOil3D(loglevel=20, weathering_model='default')
o.fallback_values['land_binary_mask'] = 0
o.fallback_values[
'sea_surface_wave_period_at_variance_spectral_density_maximum'] = 5.8
o.fallback_values['sea_surface_wave_significant_height'] = 2.5
o.seed_elements(
4,
60,
number=1000,
diameter=0.00002, # r = 10 micron
density=865,
time=datetime.now(),
entrainment_length_scale=0.01)
o.set_config('turbulentmixing:verticalresolution', 2)
o.set_config('turbulentmixing:timestep', 4)
o.run(duration=timedelta(hours=2), time_step_output=900, time_step=900)
#o.plot_property('z')
#o.plot_vertical_distribution()
#o.animation_profile()
# Check minimum depth
self.assertAlmostEqual(o.elements.z.min(), -58, 1)
#######################################################
#######################################################
# Same as above, but parameterising waves from wind
o = OpenOil3D(loglevel=20, weathering_model='default')
o.fallback_values['land_binary_mask'] = 0
o.fallback_values['x_wind'] = 10
o.seed_elements(
4,
60,
number=1000,
diameter=0.00002, # r = 10 micron
density=865,
time=datetime.now(),
entrainment_length_scale=0.01)
o.set_config('turbulentmixing:verticalresolution', 2)
o.set_config('turbulentmixing:timestep', 4)
o.run(duration=timedelta(hours=2), time_step_output=900, time_step=900)
#o.plot_vertical_distribution()
self.assertAlmostEqual(o.elements.z.min(), -52.0, 1)
#######################################################
########################################################
## Repeating last run, but with larger major (outer) time step
## Max mixing depth is expected to be same, but is slightly different
## This test is made to pass, but results should be checked
o = OpenOil3D(loglevel=20, weathering_model='default')
o.fallback_values['land_binary_mask'] = 0
o.fallback_values['x_wind'] = 10
o.seed_elements(
4,
60,
number=1000,
diameter=0.00002, # r = 10 micron
density=865,
time=datetime.now(),
entrainment_length_scale=0.01)
o.set_config('turbulentmixing:verticalresolution', 2)
o.set_config('turbulentmixing:timestep', 4)
o.run(duration=timedelta(hours=2),
time_step_output=1800,
time_step=1800)
#o.plot_vertical_distribution()
self.assertAlmostEqual(o.elements.z.min(), -60.0, 1)
from datetime import datetime, timedelta
from opendrift.models.openoil3D import OpenOil3D
from opendrift.readers import reader_netCDF_CF_generic
if __name__ == '__main__':
if len(sys.argv) == 1:
mode = 'fast'
if len(sys.argv) == 2:
mode = sys.argv[1]
if mode not in ['fast', 'slow']:
sys.exit('Usage: %s [fast|slow]' % sys.argv[0])
if len(sys.argv) > 2:
sys.exit('Usage: %s [fast|slow]' % sys.argv[0])
o = OpenOil3D(weathering_model='default')
readers_thredds = [ # Note that order (priority) is important!
'https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/case_1_mar_2017/NorKyst-800m_ZDEPTHS_his_00_1March2017.nc',
'https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/case_1_mar_2017/Nordic-4km_ZDEPTHS_avg_00.nc',
'https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/case_1_mar_2017/meps_mbr0_pp_2_5km_20170301T00Z.nc',
'https://thredds.met.no//thredds/dodsC/metusers/knutfd/thredds/case_1_mar_2017/MyWave_wam4_WAVE_20170301T00Z.nc',
'https://thredds.met.no//thredds/dodsC/metusers/knutfd/thredds/case_1_mar_2017/MyWave_wam4_RAD_20170301T00Z.nc',
]
readers_local = [ # Note that order (priority) is important!
o.test_data_folder() + '16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc',
o.test_data_folder() + '16Nov2015_NorKyst_z_surface/arome_subset_16Nov2015.nc']
if mode == 'slow':
def run_opendrift(self):
sys.stdout.write('running OpenDrift')
try:
self.budgetbutton.destroy()
except Exception as e:
print e
pass
month = np.int(self.months.index(self.monthvar.get()) + 1)
start_time = datetime(np.int(self.yearvar.get()), month,
np.int(self.datevar.get()),
np.int(self.hourvar.get()),
np.int(self.minutevar.get()))
emonth = np.int(self.months.index(self.emonthvar.get()) + 1)
end_time = datetime(np.int(self.eyearvar.get()), emonth,
np.int(self.edatevar.get()),
np.int(self.ehourvar.get()),
np.int(self.eminutevar.get()))
sys.stdout.flush()
lon = np.float(self.lon.get())
lat = np.float(self.lat.get())
radius = np.float(self.radius.get())
elon = np.float(self.elon.get())
elat = np.float(self.elat.get())
eradius = np.float(self.eradius.get())
if lon != elon or lat != elat or start_time != end_time:
lon = [lon, elon]
lat = [lat, elat]
radius = [radius, eradius]
start_time = [start_time, end_time]
cone = True
else:
cone = False
if self.model.get() == 'Leeway':
o = Leeway(loglevel=0)
for ln, lc in enumerate(self.leewaycategories):
if self.oljetype.get() == lc.strip().replace('>', ''):
print 'Leeway object category: ' + lc
break
o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
objectType=ln + 1)
if self.model.get() == 'OpenOil':
o = OpenOil3D(weathering_model='noaa', loglevel=0)
o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
cone=cone,
oiltype=self.oljetype.get())
readers = [ # Note that order (priority) is important!
'/lustre/storeA/project/copernicus/sea/romsnorkyst/zdepths1h/*fc*.nc',
'http://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be',
'/lustre/storeA/project/copernicus/sea/romsnordic/zdepths1h/roms_nordic4_ZDEPTHS_hr.fc.*.nc',
'http://thredds.met.no/thredds/dodsC/sea/nordic4km/zdepths1h/aggregate_be',
'/lustre/storeA/project/metproduction/products/meps/symlinks/thredds/meps_det_pp_2_5km_latest.nc',
'http://thredds.met.no/thredds/dodsC/meps25files/meps_det_pp_2_5km_latest.nc',
'/lustre/storeA/project/metproduction/products/arome2_5_arctic/thredds/arome_arctic_pp_2_5km_latest.nc',
'http://thredds.met.no/thredds/dodsC/aromearcticlatest/arome_arctic_pp_2_5km_latest.nc',
'/lustre/storeA/project/copernicus/sea/mywavewam4/*fc*.nc',
'http://thredds.met.no/thredds/dodsC/sea/mywavewam4/mywavewam4_be',
'http://tds.hycom.org/thredds/dodsC/GLBu0.08/expt_91.2/uv3z',
'http://oos.soest.hawaii.edu/thredds/dodsC/hioos/model/atm/ncep_global/NCEP_Global_Atmospheric_Model_best.ncd'
]
o.add_readers_from_list(readers)
o.set_config('general:basemap_resolution', 'h')
time_step = 1800 # Half hour
duration = int(self.durationhours.get()) * 3600 / time_step
if self.directionvar.get() == 'backwards':
time_step = -time_step
if self.has_diana is True:
extra_args = {
'outfile':
self.outputdir + '/opendrift_' + self.model.get() +
o.start_time.strftime('_%Y%m%d_%H%M.nc')
}
else:
extra_args = {}
mapres = self.mapresvar.get()[0]
o.set_config('general:basemap_resolution', mapres)
o.run(steps=duration,
time_step=time_step,
time_step_output=time_step,
**extra_args)
print o
if self.has_diana is True:
diana_filename = self.dianadir + '/opendrift_' + \
self.model.get() + o.start_time.strftime(
'_%Y%m%d_%H%M.nc')
o.write_netcdf_density_map(diana_filename)
tk.Button(self.seed,
text='Show in Diana',
command=lambda: os.system('diana &')).grid(row=8,
column=2,
sticky=tk.W,
pady=4)
tk.Button(self.seed, text='Animation',
command=o.animation).grid(row=8,
column=3,
sticky=tk.W,
pady=4)
if self.model.get() == 'OpenOil':
self.budgetbutton = tk.Button(self.seed,
text='Oil Budget',
command=o.plot_oil_budget)
self.budgetbutton.grid(row=8, column=4, sticky=tk.W, pady=4)
def set_model(self, model):
if model == 'OpenOil':
self.categoryLabel['text'] = 'Oil type'
self.oljetype.set('')
self.o = OpenOil3D(weathering_model='noaa', location='NORWAY')
self.categorydrop['values'] = self.o.oiltypes
self.oljetype.set(self.o.oiltypes[0])
elif model == 'Leeway':
self.categoryLabel['text'] = 'Object type'
self.oljetype.set('')
self.o = Leeway()
self.leewaycategories = [
self.o.leewayprop[c]['Description'].strip().replace('>', '')
for c in self.o.leewayprop
]
self.categorydrop['values'] = self.leewaycategories
self.oljetype.set(self.leewaycategories[0])
elif model == 'ShipDrift':
self.categoryLabel['text'] = 'Object type'
self.oljetype.set('')
self.o = ShipDrift()
print dir(self.config)
for con in self.config.winfo_children():
con.destroy()
self.con = tk.Label(self.config, text="\n\nConfiguration\n\n")
self.con.grid(row=0, column=1, rowspan=1)
print dir(self.config)
for i, cs in enumerate(self.o._config_hashstrings()):
tk.Label(self.config, text=cs).grid(row=i, column=1, rowspan=1)
print 'Setting model: ' + model
print self.o.list_configspec()
#default, minimum, maximum, options = self.o.get_configspec_default_min_max('seed:oil_type')
#print default
sc = self.o.get_seed_config()
print sc
self.seed_input = {}
self.seed_input_var = {}
self.seed_input_label = {}
self.seed_frame.destroy()
self.seed_frame = tk.Frame(self.seed,
bd=2,
relief=tk.FLAT,
padx=5,
pady=0)
self.seed_frame.grid(row=4, columnspan=8, sticky='nsew')
# FIND
for num, i in enumerate(sc):
self.seed_input_label[i] = tk.Label(self.seed_frame, text=i + '\t')
self.seed_input_label[i].grid(row=num, column=0)
self.seed_input_var[i] = tk.StringVar()
if type(sc[i]['options']) is list:
self.seed_input[i] = ttk.Combobox(
self.seed_frame,
width=50,
textvariable=self.seed_input_var[i],
values=sc[i]['options'])
self.seed_input_var[i].set(sc[i]['default'])
else:
self.seed_input[i] = tk.Entry(
self.seed_frame,
textvariable=self.seed_input_var[i],
width=6,
justify=tk.RIGHT)
self.seed_input[i].insert(0, sc[i]['default'])
self.seed_input[i].grid(row=num, column=1)
'/lustre/storeB/project/copernicus/sea/romsnordic/zdepths1h/roms_nordic4_ZDEPTHS_hr.fc.*.nc',
'https://thredds.met.no/thredds/dodsC/sea/nordic4km/zdepths1h/aggregate_be',
'/lustre/storeB/project/metproduction/products/meps/symlinks/thredds/meps_lagged_6_h_latest_2_5km_latest.nc',
'https://thredds.met.no/thredds/dodsC/mepslatest/meps_lagged_6_h_latest_2_5km_latest.nc',
'/lustre/storeB/project/metproduction/products/arome2_5_arctic/thredds/arome_arctic_pp_2_5km_latest.nc',
'https://thredds.met.no/thredds/dodsC/aromearcticlatest/arome_arctic_pp_2_5km_latest.nc',
'/lustre/storeA/project/copernicus/sea/mywavewam4/*fc*.nc',
'https://thredds.met.no/thredds/dodsC/sea/mywavewam4/mywavewam4_be',
'https://thredds.met.no/example_of_nonexisting_url.nc',
'example_of_nonexisting_file']
for case in ['oil', 'leeway']: # test two models
for timestep in [900, -900]: # forwards and backwards
for z in [0, -200]: # seeding at sea surface and at 200 m depth
if case == 'oil':
o = OpenOil3D(weathering_model='noaa')
args = {'oiltype': 'IVAR AASEN 2012',
#args = {'oiltype': 'WISTING',
'z': z}
else:
if z < 0:
continue # Only surface seeding for Leeway
o = Leeway()
args = {'objectType': 32}
o.add_readers_from_list(readers, timeout=5)
print(o)
#lons=[-0.8, 0.4]; lats=[59.9, 59.95] # NorKyst border
#lons=[4.8, 5.1]; lats=[59.9, 59.95] # Western Norway coast
#lons=[13.11, 13.13]; lats=[67.81, 67.80] # Lofoten
#!/usr/bin/env python
from datetime import timedelta
from opendrift.readers import reader_basemap_landmask
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.openoil3D import OpenOil3D
o = OpenOil3D(loglevel=0)
# Arome
reader_arome = reader_netCDF_CF_generic.Reader(o.test_data_folder() +
'16Nov2015_NorKyst_z_surface/arome_subset_16Nov2015.nc')
#reader_arome = reader_netCDF_CF_generic.Reader('http://thredds.met.no/thredds/dodsC/arome25/arome_metcoop_default2_5km_latest.nc')
# Norkyst
#reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() +
# '16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc')
#reader_norkyst = reader_netCDF_CF_generic.Reader('http://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
# Landmask (Basemap)
reader_basemap = reader_basemap_landmask.Reader(
llcrnrlon=4, llcrnrlat=59.7,
urcrnrlon=7, urcrnrlat=61.5,
resolution='h', projection='merc')
#o.add_reader([reader_basemap, reader_norkyst, reader_arome])
o.fallback_values['x_wind'] = 7
o.fallback_values['x_sea_water_velocity'] = .7
o.fallback_values['y_sea_water_velocity'] = .3
#o.fallback_values['land_binary_mask'] = 0
def __init__(self):
# Available models
self.available_models = opendrift.get_model_names()
tk.Tk.__init__(self)
##################
# Layout frames
##################
self.n = ttk.Notebook(self.master)
self.n.grid()
self.seed = ttk.Frame(self.n)
self.config = ttk.Frame(self.n)
self.n.add(self.seed, text='Seeding')
self.n.add(self.config, text='Config')
# Top
self.top = tk.Frame(self.seed, relief=tk.FLAT, pady=25, padx=25)
self.top.grid(row=0, column=1, rowspan=1)
# Config
self.con = tk.Label(self.config, text="\n\nConfiguration\n\n")
self.con.grid(row=0, column=1, rowspan=1)
# Time start and end
self.start_t = tk.Frame(self.seed, relief=tk.FLAT)
self.start_t.grid(row=2, column=0, rowspan=1)
self.end_t = tk.Frame(self.seed, relief=tk.FLAT)
self.end_t.grid(row=3, column=0, rowspan=1)
self.start = tk.Frame(self.seed,
bg='lightgray',
bd=2,
relief=tk.SUNKEN,
pady=5,
padx=5)
self.start.grid(row=2, column=1, rowspan=1)
self.end = tk.Frame(self.seed,
bg='gray',
bd=2,
relief=tk.SUNKEN,
padx=5,
pady=5)
self.end.grid(row=3, column=1)
self.coastline = tk.Frame(self.seed,
bd=2,
relief=tk.FLAT,
padx=5,
pady=0)
self.coastline.grid(row=4, column=1)
self.duration = tk.Frame(self.seed,
bd=2,
relief=tk.FLAT,
padx=5,
pady=5)
self.duration.grid(row=5, column=1)
self.output = tk.Frame(self.seed, bd=2, relief=tk.FLAT, padx=5, pady=0)
self.output.grid(row=7, column=0, columnspan=7, sticky='nsew')
self.results = tk.Frame(self.seed,
bd=2,
relief=tk.FLAT,
padx=5,
pady=0)
self.results.grid(row=6, column=7, columnspan=1, sticky='ew')
##########################
self.title('OpenDrift')
self.o = OpenOil3D(weathering_model='noaa', location='NORWAY')
try:
img = ImageTk.PhotoImage(
Image.open(self.o.test_data_folder() +
'../../docs/opendrift_logo.png'))
panel = tk.Label(self.seed, image=img)
panel.image = img
panel.grid(row=0, column=0)
except:
pass # Could not display logo
#######################################################
tk.Label(self.top, text='Simulation type').grid(row=0, column=0)
self.model = tk.StringVar()
models = opendrift.get_model_names()
self.model.set(models[0])
self.modeldrop = tk.OptionMenu(self.top,
self.model,
*(models),
command=self.set_model)
self.modeldrop.grid(row=0, column=1)
help_button = tk.Button(self.top, text='Help', command=self.show_help)
help_button.grid(row=0, column=2, padx=50)
##########
# Release
##########
startlabel = tk.Label(self.start_t, text="\n\nStart release\n\n")
startlabel.grid(row=0, column=0)
tk.Label(self.start, text='Longitude').grid(row=0, column=1)
tk.Label(self.start, text='Latitude').grid(row=0, column=0)
tk.Label(self.start, text='Radius [m]').grid(row=0, column=2)
self.latvar = tk.StringVar()
self.lonvar = tk.StringVar()
self.radiusvar = tk.StringVar()
self.lat = tk.Entry(self.start,
textvariable=self.latvar,
width=6,
justify=tk.RIGHT)
self.lon = tk.Entry(self.start,
textvariable=self.lonvar,
width=6,
justify=tk.RIGHT)
self.radius = tk.Entry(self.start,
width=6,
textvariable=self.radiusvar,
justify=tk.RIGHT)
self.lon.grid(row=1, column=1)
self.lon.insert(0, '4.5')
self.lat.grid(row=1, column=0)
self.lat.insert(0, '60.0')
self.radius.grid(row=1, column=2)
self.radius.insert(0, '1000')
self.lonvar.trace('w', self.copy_position)
self.latvar.trace('w', self.copy_position)
self.radiusvar.trace('w', self.copy_position)
##########
# Time
##########
now = datetime.utcnow()
tk.Label(self.start, text='Day').grid(row=2, column=0)
tk.Label(self.start, text='Month').grid(row=2, column=1)
tk.Label(self.start, text='Year').grid(row=2, column=2)
tk.Label(self.start, text='Hour').grid(row=2, column=3)
tk.Label(self.start, text='Minutes [UTC]').grid(row=2, column=4)
self.datevar = tk.StringVar()
self.dates = range(1, 32)
self.datevar.set(now.day)
self.date = tk.OptionMenu(self.start, self.datevar, *self.dates)
self.date.grid(row=3, column=0)
self.monthvar = tk.StringVar()
self.months = [
'January', 'February', 'March', 'April', 'May', 'June', 'July',
'August', 'September', 'October', 'November', 'December'
]
self.monthvar.set(self.months[now.month - 1])
self.month = tk.OptionMenu(self.start, self.monthvar, *self.months)
self.month.grid(row=3, column=1)
self.yearvar = tk.StringVar()
self.years = range(2015, now.year + 1)
self.yearvar.set(now.year)
self.year = tk.OptionMenu(self.start, self.yearvar, *self.years)
self.year.grid(row=3, column=2)
self.hourvar = tk.StringVar()
self.hours = range(0, 24)
self.hourvar.set(now.hour)
self.hour = tk.OptionMenu(self.start, self.hourvar, *self.hours)
self.hour.grid(row=3, column=3)
self.minutevar = tk.StringVar()
self.minutes = range(0, 60, 5)
self.minutevar.set(now.minute)
self.minute = tk.OptionMenu(self.start, self.minutevar, *self.minutes)
self.minute.grid(row=3, column=4)
self.datevar.trace('w', self.copy_position)
self.monthvar.trace('w', self.copy_position)
self.yearvar.trace('w', self.copy_position)
self.hourvar.trace('w', self.copy_position)
self.minutevar.trace('w', self.copy_position)
###############
# Release End
###############
endlabel = tk.Label(self.end_t, text="\n\nEnd release\n\n")
endlabel.grid(row=0, column=0)
tk.Label(self.end, text='Longitude', bg='gray').grid(row=0, column=1)
tk.Label(self.end, text='Latitude', bg='gray').grid(row=0, column=0)
tk.Label(self.end, text='Radius [m]', bg='gray').grid(row=0, column=2)
self.elat = tk.Entry(self.end, width=6, justify=tk.RIGHT)
self.elon = tk.Entry(self.end, width=6, justify=tk.RIGHT)
self.eradius = tk.Entry(self.end, width=6, justify=tk.RIGHT)
self.elon.grid(row=1, column=1)
self.elon.insert(0, '4.5')
self.elat.grid(row=1, column=0)
self.elat.insert(0, '60.0')
self.eradius.grid(row=1, column=2)
self.eradius.insert(0, '1000')
##########
# Time
##########
now = datetime.utcnow()
tk.Label(self.end, text='Day', bg='gray').grid(row=2, column=0)
tk.Label(self.end, text='Month', bg='gray').grid(row=2, column=1)
tk.Label(self.end, text='Year', bg='gray').grid(row=2, column=2)
tk.Label(self.end, text='Hour', bg='gray').grid(row=2, column=3)
tk.Label(self.end, text='Minutes [UTC]', bg='gray').grid(row=2,
column=4)
self.edatevar = tk.StringVar()
self.edates = range(1, 32)
self.edatevar.set(now.day)
self.edate = tk.OptionMenu(self.end, self.edatevar, *self.edates)
self.edate.grid(row=3, column=0)
self.emonthvar = tk.StringVar()
self.emonthvar.set(self.months[now.month - 1])
self.emonth = tk.OptionMenu(self.end, self.emonthvar, *self.months)
self.emonth.grid(row=3, column=1)
self.eyearvar = tk.StringVar()
self.eyears = range(2015, now.year + 1)
self.eyearvar.set(now.year)
self.eyear = tk.OptionMenu(self.end, self.eyearvar, *self.eyears)
self.eyear.grid(row=3, column=2)
self.ehourvar = tk.StringVar()
self.ehours = range(0, 24)
self.ehourvar.set(now.hour)
self.ehour = tk.OptionMenu(self.end, self.ehourvar, *self.ehours)
self.ehour.grid(row=3, column=3)
self.eminutevar = tk.StringVar()
self.eminutes = range(0, 60, 5)
self.eminutevar.set(now.minute)
self.eminute = tk.OptionMenu(self.end, self.eminutevar, *self.eminutes)
self.eminute.grid(row=3, column=4)
self.eyear.config(bg='gray')
self.emonth.config(bg='gray')
self.edate.config(bg='gray')
self.ehour.config(bg='gray')
self.eminute.config(bg='gray')
# Check seeding
check_seed = tk.Button(self.end_t,
text='Check seeding',
command=self.check_seeding)
check_seed.grid(row=1, column=0, padx=0)
#######################
# Simulation duration
#######################
tk.Label(self.coastline, text='Coastline resolution ').grid(row=4,
column=1)
self.mapresvar = tk.StringVar()
self.mapres = tk.OptionMenu(self.coastline, self.mapresvar,
*['full', 'high'])
self.mapres.grid(row=4, column=2)
self.mapresvar.set('high')
tk.Label(self.duration, text='Run simulation ').grid(row=5, column=0)
self.durationhours = tk.Entry(self.duration, width=3, justify=tk.RIGHT)
self.durationhours.grid(row=5, column=1)
self.durationhours.insert(0, 12)
tk.Label(self.duration, text=' hours ').grid(row=5, column=2)
self.directionvar = tk.StringVar()
self.directionvar.set('forwards')
self.direction = tk.OptionMenu(self.duration, self.directionvar,
'forwards', 'backwards')
self.direction.grid(row=5, column=3)
tk.Label(self.duration, text=' in time ').grid(row=5, column=4)
##############
# Output box
##############
self.text = tk.Text(self.output, wrap="word", height=18)
self.text.grid(row=6, columnspan=6, sticky='nsw')
self.text.tag_configure("stderr", foreground="#b22222")
sys.stdout = TextRedirector(self.text, "stdout")
sys.stderr = TextRedirector(self.text, "stderr")
s = tk.Scrollbar(self)
s.grid(row=6, column=6, sticky='ns')
s.config(command=self.text.yview)
self.text.config(yscrollcommand=s.set)
# Diana
self.dianadir = '/vol/vvfelles/opendrift/output/'
if os.path.exists(self.dianadir):
self.has_diana = True
print('Diana is available!')
self.outputdir = '/vol/vvfelles/opendrift/output_native/'
startbutton = 'PEIS PAO'
else:
self.has_diana = False
startbutton = 'START'
##############
# Initialise
##############
#o = OpenOil3D()
self.set_model(self.available_models[0])
##########
# RUN
##########
tk.Button(self.seed,
text=startbutton,
bg='green',
command=self.run_opendrift).grid(row=8,
column=1,
sticky=tk.W,
pady=4)
def run_opendrift(self):
sys.stdout.write('running OpenDrift')
month = np.int(self.months.index(self.monthvar.get()) + 1)
start_time = datetime(np.int(self.yearvar.get()), month,
np.int(self.datevar.get()),
np.int(self.hourvar.get()),
np.int(self.minutevar.get()))
if start_time > self.current.end_time:
sys.stdout.write('Start time after end of current data!')
start_time = self.current.start_time
emonth = np.int(self.months.index(self.emonthvar.get()) + 1)
end_time = datetime(np.int(self.eyearvar.get()), emonth,
np.int(self.edatevar.get()),
np.int(self.ehourvar.get()),
np.int(self.eminutevar.get()))
sys.stdout.flush()
lon = np.float(self.lon.get())
lat = np.float(self.lat.get())
radius = np.float(self.radius.get())
elon = np.float(self.elon.get())
elat = np.float(self.elat.get())
eradius = np.float(self.eradius.get())
if lon != elon or lat != elat or start_time != end_time:
lon = [lon, elon]
lat = [lat, elat]
radius = [radius, eradius]
start_time = [start_time, end_time]
cone = True
else:
cone = False
if self.model.get() == 'Leeway':
o = Leeway(loglevel=0)
for ln, lc in enumerate(self.leewaycategories):
if self.oljetype.get() == lc.strip().replace('>', ''):
print 'Leeway object category: ' + lc
break
o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
objectType=ln + 1)
if self.model.get() == 'OpenOil':
o = OpenOil3D(weathering_model='noaa', loglevel=0)
o.seed_elements(lon=lon,
lat=lat,
number=5000,
radius=radius,
time=start_time,
cone=cone,
oiltype=self.oljetype.get())
o.add_reader([self.current, self.wind, self.waves])
o.set_config('general:basemap_resolution', 'h')
time_step = 1800 # Half hour
duration = int(self.durationhours.get()) * 3600 / time_step
if self.directionvar.get() == 'backwards':
time_step = -time_step
o.run(steps=duration, time_step=time_step)
print o
if self.has_diana is True:
diana_filename = self.dianadir + '/opendrift_' + \
self.model.get() + o.start_time.strftime(
'_%Y%m%d_%H%M.nc')
tk.Button(self.master,
text='Save to Diana',
command=o.write_netcdf_density_map(diana_filename)).grid(
row=7, column=2, sticky=tk.W, pady=4)
tk.Button(self.master, text='Animation',
command=o.animation).grid(row=7,
column=3,
sticky=tk.W,
pady=4)
if self.model.get() == 'OpenOil':
tk.Button(self.master,
text='Oil Budget',
command=o.plot_oil_budget).grid(row=7,
column=4,
sticky=tk.W,
pady=4)
#!/usr/bin/env python
"""
Oil spill (seafloor)
==================================
"""
from datetime import timedelta
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.openoil3D import OpenOil3D
o = OpenOil3D(loglevel=0) # Set loglevel to 0 for debug information
# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader(
o.test_data_folder() +
'14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
#reader_norkyst = reader_netCDF_CF_generic.Reader('http://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
o.add_reader([reader_norkyst])
o.fallback_values['x_wind'] = 0
o.fallback_values['y_wind'] = 0
#%%
# Seeding some particles
lon = 4.5
lat = 62.0
time = [
reader_norkyst.start_time, reader_norkyst.start_time + timedelta(hours=1)
]
#%%
# Seed oil elements at defined position and time
def set_model(self, model):
if model == 'OpenOil':
self.o = OpenOil3D(weathering_model='noaa', location='NORWAY')
elif model == 'Leeway':
self.o = Leeway()
elif model == 'ShipDrift':
self.o = ShipDrift()
for con in self.config.winfo_children():
con.destroy()
self.con = tk.Label(self.config, text="\n\nConfiguration\n\n")
self.con.grid(row=0, column=1, rowspan=1)
for i, cs in enumerate(self.o._config_hashstrings()):
tk.Label(self.config, text=cs).grid(row=i, column=1, rowspan=1)
try:
self.results.destroy()
except:
pass
try:
# Removeing depth input boxes
self.depthlabel.destroy()
self.depth.destroy()
self.seafloor.destroy()
self.amount.destroy()
self.amountlabel.destroy()
except:
pass
print('Setting model: ' + model)
print(self.o.list_configspec())
sc = self.o.get_seed_config()
print(sc)
self.seed_input = {}
self.seed_input_var = {}
self.seed_input_label = {}
self.seed_frame = tk.Frame(self.seed, bd=2,
relief=tk.FLAT, padx=5, pady=0)
self.seed_frame.grid(row=60, columnspan=8, sticky='nsew')
# FIND
for num, i in enumerate(sc):
if i in ['ocean_only', 'jibeProbability']:
continue # workaround, should be avoided in future
self.seed_input_label[i] = tk.Label(self.seed_frame,
text=i + '\t')
self.seed_input_label[i].grid(row=num, column=0)
self.seed_input_var[i] = tk.StringVar()
if type(sc[i]['options']) is list:
self.seed_input[i] = ttk.Combobox(
self.seed_frame, width=50,
textvariable=self.seed_input_var[i],
values=sc[i]['options'])
self.seed_input_var[i].set(sc[i]['default'])
else:
self.seed_input[i] = tk.Entry(
self.seed_frame, textvariable=self.seed_input_var[i],
width=6, justify=tk.RIGHT)
self.seed_input[i].insert(0, sc[i]['default'])
self.seed_input[i].grid(row=num, column=1)
if model == 'OpenOil': # User may be able to chose release depth
self.depthlabel = tk.Label(self.duration, text='Spill depth [m]')
self.depthlabel.grid(row=60, column=0)
self.depthvar = tk.StringVar()
self.depth = tk.Entry(self.duration, textvariable=self.depthvar,
width=6, justify=tk.RIGHT)
self.depth.grid(row=60, column=2)
self.depth.insert(0, '0')
self.seafloorvar = tk.IntVar()
self.seafloor = tk.Checkbutton(self.duration, variable=self.seafloorvar,
text='seafloor',
command=self.seafloorbutton)
self.seafloor.grid(row=60, column=3)
self.amountvar = tk.StringVar()
self.amount = tk.Entry(self.duration, textvariable=self.amountvar,
width=6, justify=tk.RIGHT)
self.amount.grid(row=60, column=4)
self.amount.insert(0, '100')
self.amountlabel = tk.Label(self.duration, text='m3 (per hour)')
self.amountlabel.grid(row=60, column=5)
#!/usr/bin/env python
"""
Oil budget
==================================
"""
from datetime import timedelta
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.openoil3D import OpenOil3D
o = OpenOil3D(loglevel=20)
# Arome
reader_arome = reader_netCDF_CF_generic.Reader(o.test_data_folder() +
'16Nov2015_NorKyst_z_surface/arome_subset_16Nov2015.nc')
#reader_arome = reader_netCDF_CF_generic.Reader('http://thredds.met.no/thredds/dodsC/meps25files/meps_det_extracted_2_5km_latest.nc')
# Norkyst
#reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() +
# '16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc')
#reader_norkyst = reader_netCDF_CF_generic.Reader('http://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
#o.add_reader([reader_norkyst, reader_arome])
o.fallback_values['x_wind'] = 7
o.fallback_values['y_wind'] = 0
o.fallback_values['x_sea_water_velocity'] = .7
o.fallback_values['y_sea_water_velocity'] = .3
#o.fallback_values['land_binary_mask'] = 0
#o.add_reader([reader_landmask, reader_norkyst])
#%%
def __init__(self):
tk.Tk.__init__(self)
self.title('OpenDrift')
o = OpenOil3D(weathering_model='noaa', location='NORWAY')
try:
img = ImageTk.PhotoImage(
Image.open(o.test_data_folder() +
'../../docs/opendrift_logo.png'))
panel = tk.Label(self.master, image=img)
panel.image = img
panel.grid(row=0, column=0)
except:
pass # Could not display logo
self.top = tk.Frame(self.master, relief=tk.FLAT, pady=25, padx=25)
self.top.grid(row=0, column=1, rowspan=1)
tk.Label(self.top, text='Simulation type').grid(row=0, column=0)
self.model = tk.StringVar()
models = ['OpenOil', 'Leeway']
self.model.set(models[0])
self.modeldrop = tk.OptionMenu(self.top,
self.model,
*(models),
command=self.set_model)
self.modeldrop.grid(row=0, column=1)
self.categoryLabel = tk.Label(self.master, text='Oil type')
self.categoryLabel.grid(row=1, column=0)
oljetyper = o.oiltypes
self.oljetype = tk.StringVar()
self.oljetype.set(oljetyper[0])
self.categorydrop = ttk.Combobox(self.master,
textvariable=self.oljetype,
values=oljetyper)
self.categorydrop.grid(row=1, column=1)
##########
# Release
##########
self.start_t = tk.Frame(self.master, relief=tk.FLAT)
self.start_t.grid(row=2, column=0, rowspan=1)
startlabel = tk.Label(self.start_t, text="\n\nStart release\n\n")
startlabel.grid(row=0, column=0)
self.start = tk.Frame(self.master,
bg='lightgray',
bd=2,
relief=tk.SUNKEN,
pady=5,
padx=5)
self.start.grid(row=2, column=1, rowspan=1)
tk.Label(self.start, text='Longitude').grid(row=0, column=0)
tk.Label(self.start, text='Latitude').grid(row=0, column=1)
tk.Label(self.start, text='Radius [m]').grid(row=0, column=2)
self.lon = tk.Entry(self.start, width=6, justify=tk.RIGHT)
self.lat = tk.Entry(self.start, width=6, justify=tk.RIGHT)
self.radius = tk.Entry(self.start, width=6, justify=tk.RIGHT)
self.lon.grid(row=1, column=0)
self.lon.insert(0, '4.5')
self.lat.grid(row=1, column=1)
self.lat.insert(0, '60.0')
self.radius.grid(row=1, column=2)
self.radius.insert(0, '1000')
##########
# Time
##########
now = datetime.now()
tk.Label(self.start, text='Day').grid(row=2, column=0)
tk.Label(self.start, text='Month').grid(row=2, column=1)
tk.Label(self.start, text='Year').grid(row=2, column=2)
tk.Label(self.start, text='Hour').grid(row=2, column=3)
tk.Label(self.start, text='Minutes [UTC]').grid(row=2, column=4)
self.datevar = tk.StringVar()
self.dates = range(1, 32)
self.datevar.set(now.day)
self.date = tk.OptionMenu(self.start, self.datevar, *self.dates)
self.date.grid(row=3, column=0)
self.monthvar = tk.StringVar()
self.months = [
'January', 'February', 'March', 'April', 'May', 'June', 'July',
'August', 'September', 'October', 'November', 'December'
]
self.monthvar.set(self.months[now.month - 1])
self.month = tk.OptionMenu(self.start, self.monthvar, *self.months)
self.month.grid(row=3, column=1)
self.yearvar = tk.StringVar()
self.years = range(2015, 2017)
self.yearvar.set(now.year)
self.year = tk.OptionMenu(self.start, self.yearvar, *self.years)
self.year.grid(row=3, column=2)
self.hourvar = tk.StringVar()
self.hours = range(0, 24)
self.hourvar.set(now.hour)
self.hour = tk.OptionMenu(self.start, self.hourvar, *self.hours)
self.hour.grid(row=3, column=3)
self.minutevar = tk.StringVar()
self.minutes = range(0, 60, 5)
self.minutevar.set(now.minute)
self.minute = tk.OptionMenu(self.start, self.minutevar, *self.minutes)
self.minute.grid(row=3, column=4)
###############
# Release End
###############
self.end_t = tk.Frame(self.master, relief=tk.FLAT)
endlabel = tk.Label(self.end_t, text="\n\nEnd release\n\n")
endlabel.grid(row=0, column=0)
self.end_t.grid(row=3, column=0, rowspan=1)
self.end = tk.Frame(self.master,
bg='gray',
bd=2,
relief=tk.SUNKEN,
padx=5,
pady=5)
self.end.grid(row=3, column=1)
tk.Label(self.end, text='Longitude').grid(row=0, column=0)
tk.Label(self.end, text='Latitude').grid(row=0, column=1)
tk.Label(self.end, text='Radius [m]').grid(row=0, column=2)
self.elon = tk.Entry(self.end, width=6, justify=tk.RIGHT)
self.elat = tk.Entry(self.end, width=6, justify=tk.RIGHT)
self.eradius = tk.Entry(self.end, width=6, justify=tk.RIGHT)
self.elon.grid(row=1, column=0)
self.elon.insert(0, '4.5')
self.elat.grid(row=1, column=1)
self.elat.insert(0, '60.0')
self.eradius.grid(row=1, column=2)
self.eradius.insert(0, '0')
##########
# Time
##########
now = datetime.now()
tk.Label(self.end, text='Day').grid(row=2, column=0)
tk.Label(self.end, text='Month').grid(row=2, column=1)
tk.Label(self.end, text='Year').grid(row=2, column=2)
tk.Label(self.end, text='Hour').grid(row=2, column=3)
tk.Label(self.end, text='Minutes [UTC]').grid(row=2, column=4)
self.edatevar = tk.StringVar()
self.edates = range(1, 32)
self.edatevar.set(now.day)
self.edate = tk.OptionMenu(self.end, self.edatevar, *self.edates)
self.edate.grid(row=3, column=0)
self.emonthvar = tk.StringVar()
self.emonthvar.set(self.months[now.month - 1])
self.emonth = tk.OptionMenu(self.end, self.emonthvar, *self.months)
self.emonth.grid(row=3, column=1)
self.eyearvar = tk.StringVar()
self.eyears = range(2015, 2017)
self.eyearvar.set(now.year)
self.eyear = tk.OptionMenu(self.end, self.eyearvar, *self.eyears)
self.eyear.grid(row=3, column=2)
self.ehourvar = tk.StringVar()
self.ehours = range(0, 24)
self.ehourvar.set(now.hour)
self.ehour = tk.OptionMenu(self.end, self.ehourvar, *self.ehours)
self.ehour.grid(row=3, column=3)
self.eminutevar = tk.StringVar()
self.eminutes = range(0, 60, 5)
self.eminutevar.set(now.minute)
self.eminute = tk.OptionMenu(self.end, self.eminutevar, *self.eminutes)
self.eminute.grid(row=3, column=4)
#######################
# Simulation duration
#######################
self.duration = tk.Frame(self.master,
bd=2,
relief=tk.FLAT,
padx=5,
pady=15)
self.duration.grid(row=4, column=1)
tk.Label(self.duration, text='Run simulation ').grid(row=4, column=0)
self.durationhours = tk.Entry(self.duration, width=3, justify=tk.RIGHT)
self.durationhours.grid(row=4, column=1)
self.durationhours.insert(0, 12)
tk.Label(self.duration, text=' hours ').grid(row=4, column=2)
self.directionvar = tk.StringVar()
self.directionvar.set('forwards')
self.direction = tk.OptionMenu(self.duration, self.directionvar,
'forwards', 'backwards')
self.direction.grid(row=4, column=3)
tk.Label(self.duration, text=' in time ').grid(row=4, column=4)
##############
# Output box
##############
self.text = tk.Text(self, wrap="word", height=18)
self.text.grid(row=5, columnspan=5, sticky='nsew')
self.text.tag_configure("stderr", foreground="#b22222")
sys.stdout = TextRedirector(self.text, "stdout")
sys.stderr = TextRedirector(self.text, "stderr")
s = tk.Scrollbar(self)
s.grid(row=5, column=5, sticky='ns')
s.config(command=self.text.yview)
self.text.config(yscrollcommand=s.set)
# Diana
self.dianadir = '/vol/vvfelles/opendrift/output/'
if os.path.exists(self.dianadir):
self.has_diana = True
print 'Diana is available!'
else:
self.has_diana = False
##############
# Driver data
##############
o = OpenOil3D()
self.current = reader_netCDF_CF_generic.Reader(
'http://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be'
)
# o.test_data_folder() +
# '16Nov2015_NorKyst_z_surface/norkyst800_subset_16Nov2015.nc')
self.wind = reader_netCDF_CF_generic.Reader(
'http://thredds.met.no/thredds/dodsC/arome25/arome_metcoop_default2_5km_latest.nc'
)
#self.wind = reader_netCDF_CF_generic.Reader(o.test_data_folder() +
# '16Nov2015_NorKyst_z_surface/arome_subset_16Nov2015.nc')
self.waves = reader_netCDF_CF_generic.Reader(
'http://thredds.met.no/thredds/dodsC/sea/mywavewam4/mywavewam4_be')
print '#' * 41
print 'Current data coverage:'
print str(self.current.start_time) + ' - ' + \
str(self.current.end_time)
print '#' * 41
print 'Wind data coverage:'
print str(self.wind.start_time) + ' - ' + \
str(self.wind.end_time)
print '#' * 41
self.start_time = self.current.start_time
##########
# RUN
##########
tk.Button(self.master,
text='PEIS PAO',
bg='green',
command=self.run_opendrift).grid(row=7,
column=1,
sticky=tk.W,
pady=4)