def plotCombinedPDF(options,args):
if options.sample.lower() == 'g':
npops= 62
elif options.sample.lower() == 'k':
npops= 54
if options.sample.lower() == 'g':
savefile= open('binmapping_g.sav','rb')
elif options.sample.lower() == 'k':
savefile= open('binmapping_k.sav','rb')
fehs= pickle.load(savefile)
afes= pickle.load(savefile)
savefile.close()
#First calculate the derivative properties
if not options.group is None:
gafes, gfehs, legend= getMultiComparisonBins(options)
else:
legend= None
if not options.multi is None:
PDFs= multi.parallel_map((lambda x: calcAllPDFs(x,options,args)),
range(npops),
numcores=numpy.amin([options.multi,
npops,
multiprocessing.cpu_count()]))
else:
PDFs= []
for ii in range(npops):
PDFs.append(calcAllPDFs(ii,options,args))
#Go through and combine
combined_lnpdf= numpy.zeros((options.nrds,options.nfhs))
for ii in range(npops):
if not options.group is None:
if numpy.amin((gfehs-fehs[ii])**2./0.1+(gafes-afes[ii])**2./0.0025) > 0.001:
continue
combined_lnpdf+= PDFs[ii]
alogl= combined_lnpdf-numpy.nanmax(combined_lnpdf)
#Now plot
bovy_plot.bovy_print()
bovy_plot.bovy_dens2d(numpy.exp(alogl).T,
origin='lower',cmap='gist_yarg',
interpolation='nearest',
xrange=[1.9,3.5],yrange=[-1./32.,1.+1./32.],
xlabel=r'$R_d\ (\mathrm{kpc})$',ylabel=r'$f_h$')
if not legend is None:
bovy_plot.bovy_text(legend,top_left=True,
size=14.)
bovy_plot.bovy_end_print(options.outfilename)
#Calculate and print derived properties
derivProps= rawDerived(alogl,options,
vo=options.fixvc/_REFV0,zh=options.fixzh,
dlnvcdlnr=options.dlnvcdlnr)
for key in derivProps.keys():
if not '_err' in key:
print key, derivProps[key], derivProps[key+'_err'], \
derivProps[key]/derivProps[key+'_err']
return None
def plotVelComparisonDFMulti(options,args):
#Read data etc.
print "Reading the data ..."
raw= read_rawdata(options)
#Bin the data
binned= pixelAfeFeh(raw,dfeh=options.dfeh,dafe=options.dafe)
#Map the bins with ndata > minndata in 1D
fehs, afes= [], []
for ii in range(len(binned.fehedges)-1):
for jj in range(len(binned.afeedges)-1):
data= binned(binned.feh(ii),binned.afe(jj))
if len(data) < options.minndata:
continue
#print binned.feh(ii), binned.afe(jj), len(data)
fehs.append(binned.feh(ii))
afes.append(binned.afe(jj))
nabundancebins= len(fehs)
fehs= numpy.array(fehs)
afes= numpy.array(afes)
gafes, gfehs, left_legend= getMultiComparisonBins(options)
M= len(gfehs)
if options.andistances:
distancefacs= numpy.zeros_like(fehs)
gdistancefacs= numpy.zeros_like(gfehs)
for jj in range(M):
#Find pop corresponding to this bin
ii= numpy.argmin((gfehs[jj]-fehs)**2./0.1+(gafes[jj]-afes)**2./0.0025)
print ii
#Get the relevant data
data= binned(fehs[ii],afes[ii])
distancefacs[ii]= AnDistance.AnDistance(data.dered_g-data.dered_r,
data.feh)
gdistancefacs[jj]= distancefacs[ii]
options.fixdm= numpy.log10(distancefacs[ii])*5.
#Apply distance factor to the data
newraw= read_rawdata(options)
newbinned= pixelAfeFeh(newraw,dfeh=options.dfeh,dafe=options.dafe)
thisdataIndx= binned.callIndx(fehs[ii],afes[ii])
binned.data.xc[thisdataIndx]= newbinned.data.xc[thisdataIndx]
binned.data.yc[thisdataIndx]= newbinned.data.yc[thisdataIndx]
binned.data.zc[thisdataIndx]= newbinned.data.zc[thisdataIndx]
binned.data.plate[thisdataIndx]= newbinned.data.plate[thisdataIndx]
binned.data.dered_r[thisdataIndx]= newbinned.data.dered_r[thisdataIndx]
else:
distancefacs=numpy.ones_like(fehs)
gdistancefacs=numpy.ones_like(gfehs)
##########POTENTIAL PARAMETERS####################
potparams1= numpy.array([numpy.log(2.5/8.),options.fixvc/220.,
numpy.log(400./8000.),0.2,0.])
if options.group.lower() == 'aenhanced':
potparams2= numpy.array([numpy.log(2.8/8.),options.fixvc/220.,
numpy.log(400./8000.),0.266666666,0.])
potparams3= numpy.array([numpy.log(2.8/8.),options.fixvc/220.,
numpy.log(400./8000.),0.8,0.])
elif options.group.lower() == 'aintermediate':
potparams2= numpy.array([numpy.log(3.0/8.),options.fixvc/220.,
numpy.log(400./8000.),0.3333333333333,0.])
potparams3= numpy.array([numpy.log(3.0/8.),options.fixvc/220.,
numpy.log(400./8000.),0.933333333333,0.])
elif options.group.lower() == 'apoor':
potparams2= numpy.array([numpy.log(2.6/8.),options.fixvc/220.,
numpy.log(400./8000.),0.4,0.])
potparams3= numpy.array([numpy.log(2.6/8.),options.fixvc/220.,
numpy.log(400./8000.),1.0,0.])
options.potential= 'dpdiskplhalofixbulgeflatwgasalt'
#Check whether fits exist, if not, pop
removeBins= numpy.ones(M,dtype='bool')
for jj in range(M):
#Find pop corresponding to this bin
pop= numpy.argmin((gfehs[jj]-fehs)**2./0.1+(gafes[jj]-afes)**2./0.0025)
#Load savefile
if not options.init is None:
#Load initial parameters from file
savename= options.init
spl= savename.split('.')
newname= ''
for ll in range(len(spl)-1):
newname+= spl[ll]
if not ll == len(spl)-2: newname+= '.'
newname+= '_%i.' % pop
newname+= spl[-1]
if not os.path.exists(newname):
removeBins[jj]= False
else:
raise IOError("base filename not specified ...")
if numpy.sum(removeBins) == 0:
raise IOError("None of the group bins have been fit ...")
elif numpy.sum(removeBins) < M:
#Some bins have not been fit yet, and have to be remove
gfehs= list((numpy.array(gfehs))[removeBins])
gafes= list((numpy.array(gafes))[removeBins])
print "Only using %i bins out of %i ..." % (numpy.sum(removeBins),M)
M= len(gfehs)
data= []
zs= []
velps= numpy.zeros((len(binned.data),options.nv))
velps[:,:]= numpy.nan
velps2= numpy.zeros((len(binned.data),options.nv))
velps2[:,:]= numpy.nan
velps3= numpy.zeros((len(binned.data),options.nv))
velps3[:,:]= numpy.nan
cumulndata= 0
if options.type.lower() == 'vz':
if options.group == 'aenhanced':
vs= numpy.linspace(-180.,180.,options.nv)
xrange=[-180.,180.]
bins= 39
elif options.group == 'aintermediate':
vs= numpy.linspace(-150.,150.,options.nv)
xrange=[-150.,150.]
bins= 33
else: # options.group == 'aenhanced':
vs= numpy.linspace(-120.,120.,options.nv)
xrange=[-140.,140.]
bins= 26
xlabel=r'$V_Z\ (\mathrm{km\,s}^{-1})$'
elif options.type.lower() == 'vr':
if options.group == 'aenhanced':
vs= numpy.linspace(-220.,220.,options.nv)
xrange=[-220.,220.]
bins= 39
else: # options.group == 'aenhanced':
vs= numpy.linspace(-150.,150.,options.nv)
xrange=[-150.,150.]
bins= 26
xlabel=r'$V_R\ (\mathrm{km\,s}^{-1})$'
elif options.type.lower() == 'vt':
if options.group == 'aenhanced':
vs= numpy.linspace(0.01,350.,options.nv)
xrange=[0.,350.]
bins= 39
else: # options.group == 'aenhanced':
vs= numpy.linspace(0.01,350.,options.nv)
xrange=[0.,350.]
bins= 39
xlabel=r'$V_T\ (\mathrm{km\,s}^{-1})$'
alts= True
if not options.multi is None:
#Generate list of temporary files
tmpfiles= []
for jj in range(M):
tfile, tmpfile= tempfile.mkstemp()
os.close(tfile) #Close because it's open
tmpfiles.append(tmpfile)
try:
dummy= multi.parallel_map((lambda x: run_calc_model_multi(x,M,gfehs,gafes,fehs,afes,options,
vs,
potparams1,potparams2,potparams3,
distancefacs,
binned,alts,True,tmpfiles)),
range(M),
numcores=numpy.amin([M,
multiprocessing.cpu_count(),
options.multi]))
#Now read all of the temporary files
for jj in range(M):
tmpfile= open(tmpfiles[jj],'rb')
tvelps= pickle.load(tmpfile)
if tvelps is None:
continue
tvelps2= pickle.load(tmpfile)
tvelps3= pickle.load(tmpfile)
data.extend(pickle.load(tmpfile))
zs.extend(pickle.load(tmpfile))
tndata= pickle.load(tmpfile)
velps[cumulndata:cumulndata+tndata,:]= tvelps
velps2[cumulndata:cumulndata+tndata,:]= tvelps2
velps3[cumulndata:cumulndata+tndata,:]= tvelps3
cumulndata+= tndata
tmpfile.close()
finally:
for jj in range(M):
os.remove(tmpfiles[jj])
else:
for jj in range(M):
try:
tvelps, tvelps2, tvelps3, tdata, tzs, tndata= run_calc_model_multi(jj,M,gfehs,gafes,fehs,afes,options,
vs,
potparams1,potparams2,potparams3,
distancefacs,
binned,alts,
False,None)
except TypeError:
continue
velps[cumulndata:cumulndata+tndata,:]= tvelps
velps2[cumulndata:cumulndata+tndata,:]= tvelps2
velps3[cumulndata:cumulndata+tndata,:]= tvelps3
data.extend(tdata)
zs.extend(tzs)
cumulndata+= tndata
bovy_plot.bovy_print()
bovy_plot.bovy_hist(data,bins=26,normed=True,color='k',
histtype='step',
xrange=xrange,xlabel=xlabel)
plotp= numpy.nansum(velps[:cumulndata,:],axis=0)/cumulndata
print numpy.sum(plotp)*(vs[1]-vs[0])
bovy_plot.bovy_plot(vs,plotp,'k-',overplot=True)
if alts:
plotp= numpy.nansum(velps2,axis=0)/cumulndata
bovy_plot.bovy_plot(vs,plotp,'k--',overplot=True)
plotp= numpy.nansum(velps3,axis=0)/cumulndata
bovy_plot.bovy_plot(vs,plotp,'k:',overplot=True)
if not left_legend is None:
bovy_plot.bovy_text(left_legend,top_left=True,size=_legendsize)
bovy_plot.bovy_text(r'$\mathrm{full\ subsample}$'
+'\n'+
'$%i \ \ \mathrm{stars}$' %
len(data),top_right=True,
size=_legendsize)
bovy_plot.bovy_end_print(args[0]+'model_data_g_'+options.group+'_'+options.type+'dist_all.'+options.ext)
if options.all: return None
#Plot zranges
#First determine the ranges that have nstars in them
rranges_nstars= 1000
zs= numpy.array(zs)
data= numpy.array(data)
tdata_z= sorted(numpy.fabs(zs))
nbins= numpy.ceil(len(tdata_z)/float(rranges_nstars))
rranges_nstars= int(numpy.floor(float(len(tdata_z))/nbins))
accum= rranges_nstars
zranges= [0.0]
while accum < len(tdata_z):
zranges.append(tdata_z[accum])
accum+= rranges_nstars
zranges.append(5.0)
print zranges
#zranges= [0.5,1.,1.5,2.,3.,4.]
nzranges= len(zranges)-1
sigzsd= numpy.empty(nzranges)
esigzsd= numpy.empty(nzranges)
sigzs1= numpy.empty(nzranges)
sigzs2= numpy.empty(nzranges)
sigzs3= numpy.empty(nzranges)
for ii in range(nzranges):
indx= (numpy.fabs(zs) >= zranges[ii])*(numpy.fabs(zs) < zranges[ii+1])
plotp= numpy.nansum(velps[indx,:],axis=0)/numpy.sum(indx)
yrange= [0.,1.35*numpy.nanmax(plotp)]
bovy_plot.bovy_print()
bovy_plot.bovy_hist(data[indx],bins=26,normed=True,color='k',
histtype='step',
yrange=yrange,
xrange=xrange,xlabel=xlabel)
sigzsd[ii]= numpy.std(data[indx][(numpy.fabs(data[indx]) < 100.)])
esigzsd[ii]= sigzsd[ii]/numpy.sqrt(float(len(data[indx][(numpy.fabs(data[indx]) < 100.)])))
sigzs1[ii]= numpy.sqrt(numpy.sum(vs**2.*plotp)/numpy.sum(plotp)-(numpy.sum(vs*plotp)/numpy.sum(plotp))**2.)
bovy_plot.bovy_plot(vs,plotp,'k-',overplot=True)
if alts:
plotp= numpy.nansum(velps2[indx,:],axis=0)/numpy.sum(indx)
sigzs2[ii]= numpy.sqrt(numpy.sum(vs**2.*plotp)/numpy.sum(plotp)-(numpy.sum(vs*plotp)/numpy.sum(plotp))**2.)
bovy_plot.bovy_plot(vs,plotp,'k--',overplot=True)
plotp= numpy.nansum(velps3[indx,:],axis=0)/numpy.sum(indx)
sigzs3[ii]= numpy.sqrt(numpy.sum(vs**2.*plotp)/numpy.sum(plotp)-(numpy.sum(vs*plotp)/numpy.sum(plotp))**2.)
bovy_plot.bovy_plot(vs,plotp,'k:',overplot=True)
bovy_plot.bovy_text(r'$ %i\ \mathrm{pc} \leq |Z| < %i\ \mathrm{pc}$' % (int(1000*zranges[ii]),int(1000*zranges[ii+1])),
# +'\n'+
# '$%i \ \ \mathrm{stars}$' % (numpy.sum(indx)),
top_right=True,
size=_legendsize)
bovy_plot.bovy_end_print(args[0]+'model_data_g_'+options.group+'_'+options.type+'dist_z%.1f_z%.1f.' % (zranges[ii],zranges[ii+1])+options.ext)
#Plot velocity dispersion as a function of |Z|
bovy_plot.bovy_print()
bovy_plot.bovy_plot((((numpy.roll(zranges,-1)+zranges)/2.)[:-1]),sigzsd,
'ko',
xlabel=r'$|Z|\ (\mathrm{kpc})$',
ylabel=r'$\sigma_z\ (\mathrm{km\,s}^{-1})$',
xrange=[0.,4.],
yrange=[0.,60.])
pyplot.errorbar(((numpy.roll(zranges,-1)+zranges)/2.)[:-1],sigzsd,
yerr=esigzsd,
marker='o',color='k',linestyle='none')
bovy_plot.bovy_plot((((numpy.roll(zranges,-1)+zranges)/2.)[:-1]),sigzs1,
'r+',overplot=True,ms=10.)
bovy_plot.bovy_plot((((numpy.roll(zranges,-1)+zranges)/2.)[:-1]),sigzs2,
'cx',overplot=True,ms=10.)
bovy_plot.bovy_plot((((numpy.roll(zranges,-1)+zranges)/2.)[:-1]),sigzs3,
'gd',overplot=True,ms=10.)
bovy_plot.bovy_end_print(args[0]+'model_data_g_'+options.group+'_'+options.type+'dist_szvsz.' +options.ext)
return None