if len(artifact_missing_file):
warning = "Did not find any file for {0} artifact(s). ".format(
len(artifact_missing_file))
if len(artifact_multiple_file):
warning += "Found multiple files for {0} artifact(s), none of these were uploaded.".format(
len(artifact_multiple_file))
if warning:
warning = "Warning: " + warning
abstract = "Uploaded {0} file(s). {1}".format(len(found_files), warning)
print >> sys.stderr, abstract # stderr will be logged and printed in GUI
if __name__ == "__main__":
parser = ArgumentParser(description=DESC)
parser.add_argument('--pid', help='Lims id for current Process')
parser.add_argument('--log', help='Log file for runtime info and errors')
parser.add_argument('--path', help='Path where image files are located')
parser.add_argument('--instrument',
default="caliper",
help='instrument deciding the file regex format')
args = parser.parse_args()
lims = Lims(BASEURI, USERNAME, PASSWORD)
lims.check_version()
with EppLogger(args.log, lims=lims, prepend=True) as epp_logger:
main(lims, args, epp_logger)
lp_args = ["lp"]
if args.hostname:
#remove that when all the calls to this script have been updated
if args.hostname == 'homer.scilifelab.se:631':
args.hostname = 'homer2.scilifelab.se:631'
lp_args += ["-h", args.hostname]
if args.destination:
lp_args += ["-d", args.destination]
lp_args.append("-") # lp accepts stdin if '-' is given as filename
logging.info('Ready to call lp for printing.')
sp = subprocess.Popen(lp_args,
stdin=subprocess.PIPE,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
sp.stdin.write(str('\n'.join(lines)))
logging.info('lp command is called for printing.')
stdout, stderr = sp.communicate() # Will wait for sp to finish
logging.info('lp stdout: {0}'.format(stdout))
logging.info('lp stderr: {0}'.format(stderr))
logging.info('lp command finished')
sp.stdin.close()
if __name__ == '__main__':
arguments = getArgs()
lims = Lims(BASEURI, USERNAME, PASSWORD)
lims.check_version()
prepend = not arguments.no_prepend
with EppLogger(arguments.log, lims=lims, prepend=prepend) as epp_logger:
main(arguments, lims, epp_logger)