class Endpoints(Resource): """ Central resource for managing Endpoints. """ _URL = {'get': '/'} rate_limit_url = HrefField() user_url = HrefField() users_url = HrefField() billing_url = HrefField() projects_url = HrefField() files_url = HrefField() tasks_url = HrefField() apps_url = HrefField() action_url = HrefField() upload_url = HrefField() @classmethod def get(cls, api=None, **kwargs): """ Get api links. :param api: Api instance. :return: Endpoints object. """ api = api if api else cls._API endpoints = api.get(url=cls._URL['get']).json() return Endpoints(api=api, **endpoints) @staticmethod def __str__(): return six.text_type('<Endpoints>')
class Endpoints(Resource): """ Central resource for managing Endpoints. """ _URL = {'get': '/'} rate_limit_url = HrefField(read_only=True) user_url = HrefField(read_only=True) users_url = HrefField(read_only=True) billing_url = HrefField(read_only=True) projects_url = HrefField(read_only=True) files_url = HrefField(read_only=True) tasks_url = HrefField(read_only=True) apps_url = HrefField(read_only=True) action_url = HrefField(read_only=True) upload_url = HrefField(read_only=True) @classmethod def get(cls, api=None, **kwargs): """ Get api links. :param api: Api instance. :return: Endpoints object. """ api = api if api else cls._API extra = {'resource': cls.__name__, 'query': {}} logger.info('Getting resources', extra=extra) endpoints = api.get(url=cls._URL['get']).json() return Endpoints(api=api, **endpoints) def __str__(self): return '<Endpoints>'
class Invoice(Resource): """ Central resource for managing invoices. """ _URL = {'query': '/billing/invoices', 'get': '/billing/invoices/{id}'} href = HrefField() id = StringField(read_only=True) pending = BooleanField(read_only=True) analysis_costs = CompoundField(Price, read_only=True) storage_costs = CompoundField(Price, read_only=True) total = CompoundField(Price, read_only=True) invoice_period = CompoundField(InvoicePeriod, read_only=True) def __str__(self): return six.text_type('<Invoice: id={id}>'.format(id=self.id)) @classmethod def query(cls, offset=None, limit=None, api=None): """ Query (List) invoices. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: Collection object. """ api = api if api else cls._API return super(Invoice, cls)._query(url=cls._URL['query'], offset=offset, limit=limit, fields='_all', api=api)
class Member(Resource): """ Central resource for managing project members. """ _URL = {'permissions': '/permissions'} href = HrefField() username = StringField(read_only=False) permissions = CompoundField(Permissions) def __str__(self): return six.text_type( '<Member: username={username}>'.format(username=self.username)) def save(self): """ Saves modification to the api server. """ data = self._modified_data() try: data = data['permissions'] if bool(data): url = six.text_type(self.href) + self._URL['permissions'] self._api.patch(url=url, data=data, append_base=False) except KeyError: raise ResourceNotModified()
class Division(Resource): """ Central resource for managing divisions. """ _URL = { 'query': '/divisions', 'get': '/divisions/{id}', } href = HrefField() id = StringField(read_only=True) name = StringField(read_only=True) def __str__(self): return six.text_type('<Division: id={id}>'.format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) @classmethod def query(cls, offset=None, limit=None, api=None): """ Query (List) divisions. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: Collection object. """ api = api if api else cls._API return super(Division, cls)._query(url=cls._URL['query'], offset=offset, limit=limit, fields='_all', api=api) @classmethod def get(cls, id, api=None): return super(Division, cls).get(id) def reload(self): super(Division, self).reload() def get_teams(self, offset=None, limit=None): return self._api.teams.query(division=self.id, offset=offset, limit=limit) def get_members(self, role=None, offset=None, limit=None): return self._api.users.query(self, role=role, offset=offset, limit=limit)
class VolumeLink(Resource): """ Pagination links for volumes. """ next = HrefField(read_only=True) def __str__(self): return f'<VolumeLink: next={self.next}>'
class DownloadInfo(Resource): """ Download info resource contains download url for the file. """ url = HrefField(read_only=True) def __str__(self): return f'<DownloadInfo: url={self.url}>'
class DownloadInfo(Resource): """ Download info resource contains download url for the file. """ url = HrefField() def __str__(self): return six.text_type('<DownloadInfo: url={url}>'.format(url=self.url))
class VolumeLink(Resource): """ Pagination links for volumes. """ next = HrefField() def __str__(self): return six.text_type( '<VolumeLink: next={next}>'.format(next=self.next))
class Link(Resource): """ Pagination links. """ href = HrefField(read_only=True) rel = StringField(read_only=True) method = StringField(read_only=True) def __str__(self): return ( f'<Link: method={self.method}, rel={self.rel}, href={self.href}>')
class ProjectBreakdown(Resource): """ Project breakdown resource contains information regarding billing group project breakdown costs. """ href = HrefField(read_only=True) analysis_spending = CompoundField(Price, read_only=True) task_breakdown = CompoundListField(TaskBreakdown, read_only=True) def __str__(self): return f'<ProjectBreakdown: href={self.href}>'
class Link(Resource): """ Pagination links. """ href = HrefField() rel = StringField(read_only=True) method = StringField(read_only=True) def __str__(self): return six.text_type( '<Link: method={method}, rel={rel}, href={href}>'.format( method=self.method, rel=self.rel, href=self.href))
class TaskBreakdown(Resource): """ Task breakdown resource contains information regarding billing group analysis breakdown costs. """ href = HrefField(read_only=True) runner_username = StringField(read_only=True) time_started = DateTimeField(read_only=True) time_finished = DateTimeField(read_only=True) task_cost = CompoundField(Price, read_only=True) def __str__(self): return f'<TaskBreakdown: href={self.href}>'
class BillingGroupBreakdown(Resource): """ Central resource for managing billing group breakdowns. """ _URL = {'get': '/billing/groups/{id}/breakdown'} href = HrefField() project_breakdown = CompoundListField(ProjectBreakdown, read_only=True) total_spending = CompoundField(Price, read_only=True) @staticmethod def __str__(): return six.text_type('<BillingGroupBreakdown>')
class User(Resource): """ Central resource for managing tasks. """ _URL = {'me': '/user', 'get': '/users/{id}'} href = HrefField() username = StringField(read_only=True) email = StringField(read_only=True) first_name = StringField(read_only=True) last_name = StringField(read_only=True) affiliation = StringField(read_only=True) phone = StringField(read_only=True) address = StringField(read_only=True) state = StringField(read_only=True) country = StringField(read_only=True) zip_code = StringField(read_only=True) city = StringField(read_only=True) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.username == other.username def __ne__(self, other): return not self.__eq__(other) def __str__(self): return six.text_type( '<User: username={username}>'.format(username=self.username)) @classmethod def me(cls, api=None): """ Retrieves current user information. :param api: Api instance. :return: User object. """ api = api if api else cls._API extra = {'resource': cls.__name__, 'query': {}} logger.info('Fetching user information', extra=extra) user_data = api.get(cls._URL['me']).json() return User(api=api, **user_data) @classmethod def get(cls, user, api=None): api = api if api else cls._API user = Transform.to_user(user) return super(User, cls).get(id=user, api=api)
class ExecutionDetails(Resource): """ Task execution details. """ href = HrefField() start_time = DateTimeField(read_only=True) end_time = DateTimeField(read_only=True) status = StringField(read_only=True) message = StringField(read_only=True) jobs = CompoundListField(Job, read_only=True) @staticmethod def __str__(): return six.text_type('<Execution Details>')
class Division(Resource): """ Central resource for managing divisions. """ _URL = { 'query': '/divisions', 'get': '/divisions/{id}', } href = HrefField(read_only=True) id = StringField(read_only=True) name = StringField(read_only=True) def __str__(self): return f'<Division: id={self.id}>' def __eq__(self, other): if type(other) is not type(self): return False return self is other or self.id == other.id @classmethod def query(cls, offset=None, limit=None, api=None): """ Query (List) divisions. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: Collection object. """ api = api if api else cls._API return super()._query(url=cls._URL['query'], offset=offset, limit=limit, fields='_all', api=api) def get_teams(self, offset=None, limit=None): return self._api.teams.query(division=self.id, offset=offset, limit=limit) def get_members(self, role=None, offset=None, limit=None): return self._api.users.query(self, role=role, offset=offset, limit=limit)
class BillingGroup(Resource): """ Central resource for managing billing groups. """ _URL = {'query': '/billing/groups', 'get': '/billing/groups/{id}'} href = HrefField() id = UuidField() owner = StringField(read_only=True) name = StringField(read_only=True) type = StringField(read_only=True) pending = BooleanField(read_only=True) disabled = BooleanField(read_only=False) balance = CompoundField(Price, read_only=True) def __str__(self): return six.text_type('<BillingGroup: id={id}>'.format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) @classmethod def query(cls, offset=None, limit=None, api=None): """ Query (List) billing group. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. :param api: Api instance. """ api = api or cls._API return super(BillingGroup, cls)._query(url=cls._URL['query'], offset=offset, limit=limit, fields='_all', api=api) def breakdown(self): """ Get Billing group breakdown for the current billing group. """ return BillingGroupBreakdown.get(self.id, self._api)
class TeamMember(Resource): """ Central resource for managing team members. """ href = HrefField(read_only=True) id = StringField(read_only=True) username = StringField(read_only=False) role = StringField(read_only=True) def __eq__(self, other): if type(other) is not type(self): return False return self is other or self.id == other.id def __str__(self): return f'<Team member: username={self.username}>'
class Member(Resource): """ Central resource for managing members. This resource is reused on both projects and volumes. """ _URL = { 'permissions': '/permissions' } href = HrefField() id = StringField(read_only=True) username = StringField(read_only=False) email = StringField(read_only=False) type = StringField(read_only=False) permissions = CompoundField(Permissions, read_only=False) def __str__(self): return six.text_type('<Member: id={id}>' .format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) @inplace_reload def save(self, inplace=True): """ Saves modification to the api server. """ data = self._modified_data() data = data['permissions'] if bool(data): url = six.text_type(self.href) + self._URL['permissions'] extra = {'resource': self.__class__.__name__, 'query': data} logger.info('Modifying permissions', extra=extra) self._api.patch(url=url, data=data, append_base=False) else: raise ResourceNotModified()
class TeamMember(Resource): """ Central resource for managing team members. """ href = HrefField() id = StringField(read_only=True) username = StringField(read_only=False) role = StringField(read_only=True) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) def __str__(self): return six.text_type('<Team member: username={username}>'.format( username=self.username))
class Task(Resource): """ Central resource for managing tasks. """ _URL = { 'query': '/tasks', 'get': '/tasks/{id}', 'delete': '/tasks/{id}', 'run': '/tasks/{id}/actions/run', 'abort': '/tasks/{id}/actions/abort', 'execution_details': "/tasks/{id}/execution_details" } href = HrefField() id = UuidField() name = StringField() status = StringField(read_only=True) description = StringField(read_only=False) project = StringField() app = StringField() type = StringField(read_only=True) created_by = StringField(read_only=True) executed_by = StringField(read_only=True) start_time = DateTimeField(read_only=True) created_time = DateTimeField(read_only=True) end_time = DateTimeField(read_only=True) batch = BooleanField(read_only=False) batch_by = CompoundField(BatchBy, read_only=False) batch_group = CompoundField(BatchGroup, read_only=True) batch_input = StringField(read_only=False) parent = StringField(read_only=True) execution_status = CompoundField(ExecutionStatus, read_only=True) errors = DictField(read_only=True) warnings = DictField(read_only=True) price = CompoundField(Price, read_only=True) inputs = CompoundField(Input, read_only=False) outputs = CompoundField(Output, read_only=True) use_interruptible_instances = BooleanField() def __str__(self): return six.text_type('<Task: id={id}>'.format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) @classmethod def query(cls, project=None, status=None, batch=None, parent=None, created_from=None, created_to=None, started_from=None, started_to=None, ended_from=None, ended_to=None, offset=None, limit=None, api=None): """ Query (List) tasks. Date parameters may be both strings and python date objects. :param project: Target project. optional. :param status: Task status. :param batch: Only batch tasks. :param parent: Parent batch task identifier. :param ended_to: All tasks that ended until this date. :param ended_from: All tasks that ended from this date. :param started_to: All tasks that were started until this date. :param started_from: All tasks that were started from this date. :param created_to: All tasks that were created until this date. :param created_from: All tasks that were created from this date. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: Collection object. """ api = api or cls._API if parent: parent = Transform.to_task(parent) if project: project = Transform.to_project(project) if created_from: created_from = Transform.to_datestring(created_from) if created_to: created_to = Transform.to_datestring(created_to) if started_from: started_from = Transform.to_datestring(started_from) if started_to: started_to = Transform.to_datestring(started_to) if ended_from: ended_from = Transform.to_datestring(ended_from) if ended_to: ended_to = Transform.to_datestring(ended_to) return super(Task, cls)._query(url=cls._URL['query'], project=project, status=status, batch=batch, parent=parent, created_from=created_from, created_to=created_to, started_from=started_from, started_to=started_to, ended_from=ended_from, ended_to=ended_to, offset=offset, limit=limit, fields='_all', api=api) @classmethod def create(cls, name, project, app, revision=None, batch_input=None, batch_by=None, inputs=None, description=None, run=False, disable_batch=False, interruptible=True, api=None): """ Creates a task on server. :param name: Task name. :param project: Project identifier. :param app: CWL app identifier. :param revision: CWL app revision. :param batch_input: Batch input. :param batch_by: Batch criteria. :param inputs: Input map. :param description: Task description. :param run: True if you want to run a task upon creation. :param disable_batch: If True disables batching of a batch task. :param interruptible: If True interruptible instance will be used. :param api: Api instance. :return: Task object. :raises: TaskValidationError if validation Fails. :raises: SbgError if any exception occurs during request. """ task_data = {} params = {} project = Transform.to_project(project) app_id = Transform.to_app(app) if revision: app_id = app_id + "/" + six.text_type(revision) else: if isinstance(app, App): app_id = app_id + "/" + six.text_type(app.revision) task_inputs = { 'inputs': Task._serialize_inputs(inputs) if inputs else {} } if batch_input and batch_by: task_data['batch_input'] = batch_input task_data['batch_by'] = batch_by if disable_batch: params.update({'batch': False}) task_meta = { 'name': name, 'project': project, 'app': app_id, 'description': description, } task_data.update(task_meta) task_data.update(task_inputs) task_data['use_interruptible_instances'] = interruptible if run: params.update({'action': 'run'}) api = api if api else cls._API created_task = api.post(cls._URL['query'], data=task_data, params=params).json() if run and 'errors' in created_task: if bool(created_task['errors']): raise TaskValidationError( 'Unable to run task! Task contains errors.', task=Task(api=api, **created_task)) return Task(api=api, **created_task) @inplace_reload def abort(self, inplace=True): """ Abort task :param inplace Apply action on the current object or return a new one. :return: Task object. """ extra = {'resource': self.__class__.__name__, 'query': {'id': self.id}} logger.info('Aborting task', extra=extra) task_data = self._api.post(url=self._URL['abort'].format( id=self.id)).json() return Task(api=self._api, **task_data) @inplace_reload def run(self, batch=True, interruptible=True, inplace=True): """ Run task :param batch if False batching will be disabled. :param interruptible: If true interruptible instance will be used. :param inplace Apply action on the current object or return a new one. :return: Task object. """ params = {} if not batch: params['batch'] = False params['use_interruptible_instances'] = interruptible extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'batch': batch } } logger.info('Running task', extra=extra) task_data = self._api.post(url=self._URL['run'].format(id=self.id), params=params).json() return Task(api=self._api, **task_data) @inplace_reload def save(self, inplace=True): """ Saves all modification to the task on the server. :param inplace Apply edits on the current instance or get a new one. :return: Task instance. """ modified_data = self._modified_data() if bool(modified_data): task_request_data = {} inputs = modified_data.pop('inputs', None) task_request_data.update(modified_data) if inputs: task_request_data['inputs'] = self._serialize_inputs(inputs) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': task_request_data } } logger.info('Saving task', extra=extra) data = self._api.patch(url=self._URL['get'].format(id=self.id), data=task_request_data).json() task = Task(api=self._api, **data) return task @staticmethod def _serialize_inputs(inputs): """Serialize task input dictionary""" serialized_inputs = {} for input_id, input_value in inputs.items(): if isinstance(input_value, list): serialized_list = Task._serialize_input_list(input_value) serialized_inputs[input_id] = serialized_list else: if isinstance(input_value, File): input_value = Task._to_api_file_format(input_value) serialized_inputs[input_id] = input_value return serialized_inputs @staticmethod def _serialize_input_list(input_value): """Recursively serialize task input list""" input_list = [] for item in input_value: if isinstance(item, list): input_list.append(Task._serialize_input_list(item)) else: if isinstance(item, File): item = Task._to_api_file_format(item) input_list.append(item) return input_list @staticmethod def _to_api_file_format(_file): api_file = {'class': 'File', 'path': _file.id} if _file.name: api_file['name'] = _file.name return api_file def get_execution_details(self): """ Retrieves execution details for a task. :return: Execution details instance. """ extra = {'resource': self.__class__.__name__, 'query': {'id': self.id}} logger.info('Get execution details', extra=extra) data = self._api.get( self._URL['execution_details'].format(id=self.id)).json() return ExecutionDetails(api=self._api, **data) def get_batch_children(self): """ Retrieves batch child tasks for this task if its a batch task. :return: Collection instance. :raises SbError if task is not a batch task. """ if not self.batch: raise SbgError("This task is not a batch task.") return self.query(parent=self.id, api=self._api)
class AutomationRun(Resource): """ Central resource for managing automation runs. """ _URL = { 'query': '/automation/runs', 'get': '/automation/runs/{id}', 'actions': '/automation/runs/{id}/actions/{action}', 'state': '/automation/runs/{id}/state', } href = HrefField(read_only=True) id = StringField(read_only=True) name = StringField(read_only=False) automation = CompoundField(Automation, read_only=True) package = CompoundField(AutomationPackage, read_only=True) inputs = DictField(read_only=False) outputs = DictField(read_only=True) settings = DictField(read_only=False) created_on = DateTimeField(read_only=True) start_time = DateTimeField(read_only=True) end_time = DateTimeField(read_only=True) resumed_from = StringField(read_only=True) created_by = StringField(read_only=True) status = StringField(read_only=True) message = StringField(read_only=True) execution_details = DictField(read_only=True) memory_limit = IntegerField(read_only=False) project_id = StringField(read_only=True) def __eq__(self, other): if type(other) is not type(self): return False return self is other or self.id == other.id def __str__(self): return f'<AutomationRun: id={self.id}>' @classmethod def query(cls, automation=None, package=None, status=None, name=None, created_by=None, created_from=None, created_to=None, project_id=None, order_by=None, order=None, offset=None, limit=None, api=None): """ Query (List) automation runs. :param name: Automation run name :param automation: Automation template :param package: Package :param status: Run status :param created_by: Username of user that created the run :param order_by: Property by which to order results :param order: Ascending or descending ("asc" or "desc") :param created_from: Date the run is created after :param created_to: Date the run is created before :param project_id: Id of project if Automation run is project based :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: collection object """ if automation: automation = Transform.to_automation(automation) if package: package = Transform.to_automation_package(package) api = api or cls._API return super()._query( url=cls._URL['query'], name=name, automation_id=automation, package_id=package, status=status, created_by=created_by, created_from=created_from, created_to=created_to, project_id=project_id, order_by=order_by, order=order, offset=offset, limit=limit, api=api, ) @classmethod def create(cls, package, inputs=None, settings=None, resume_from=None, name=None, secret_settings=None, memory_limit=None, api=None): """ Create and start a new run. :param package: Automation package id :param inputs: Input dictionary :param settings: Settings override dictionary :param resume_from: Run to resume from :param name: Automation run name :param secret_settings: dict to override secret_settings from automation template :param memory_limit: Memory limit in MB. :param api: sevenbridges Api instance :return: AutomationRun object """ package = Transform.to_automation_package(package) data = {'package': package} if inputs: data['inputs'] = inputs else: data['inputs'] = dict() if settings: data['settings'] = settings if resume_from: data['resume_from'] = resume_from if name: data['name'] = name if secret_settings: data['secret_settings'] = secret_settings if memory_limit: data['memory_limit'] = memory_limit api = api or cls._API automation_run = api.post( url=cls._URL['query'], data=data, ).json() return AutomationRun(api=api, **automation_run) @inplace_reload def save(self, inplace=True): """ Saves all modification to the automation run on the server. :param inplace Apply edits on the current instance or get a new one. :return: Automation run instance. """ modified_data = self._modified_data() if modified_data: extra = { 'resource': type(self).__name__, 'query': { 'id': self.id, 'modified_data': modified_data } } logger.info('Saving automation run', extra=extra) data = self._api.patch(url=self._URL['get'].format(id=self.id), data=modified_data).json() return AutomationRun(api=self._api, **data) else: raise ResourceNotModified() @classmethod def rerun(cls, id, package=None, inputs=None, settings=None, resume_from=None, name=None, secret_settings=None, merge=True, api=None): """ Create and start rerun of existing automation. :param id: Automation id to rerun :param package: Automation package id :param inputs: Input dictionary :param settings: Settings override dictionary :param resume_from: Run to resume from :param name: Automation run name :param secret_settings: dict to override secret_settings from automation template :param merge: merge settings and inputs of run :param api: sevenbridges Api instance :return: AutomationRun object """ data = {'merge': merge} if package: data['package'] = package if inputs: data['inputs'] = inputs if settings: data['settings'] = settings if resume_from: data['resume_from'] = resume_from if name: data['name'] = name if secret_settings: data['secret_settings'] = secret_settings api = api or cls._API automation_run = api.post(url=cls._URL['actions'].format( id=id, action=AutomationRunActions.RERUN)).json() return AutomationRun(api=api, **automation_run) def stop(self, api=None): """ Stop automation run. :param api: sevenbridges Api instance. :return: AutomationRun object """ api = api or self._API return api.post(url=self._URL['actions'].format( id=self.id, action=AutomationRunActions.STOP)).content def get_log_file(self, api=None): """ Retrieve automation run log. :param api: sevenbridges Api instance :return: Log string """ api = api or self._API log_file_data = self.execution_details.get('log_file') return File(api=api, **log_file_data) if log_file_data else None def get_state(self, api=None): """ Retrieve automation run state. :param api: sevenbridges Api instance :return: State file json contents as string """ api = api or self._API return api.get(self._URL['state'].format(id=self.id)).json()
class Automation(Resource): """ Central resource for managing automations. """ # noinspection PyProtectedMember _URL = { 'query': '/automation/automations', 'get': '/automation/automations/{id}', 'member': AutomationMember._URL['get'], 'members': AutomationMember._URL['query'], 'packages': AutomationPackage._URL['query'], 'archive': '/automation/automations/{automation_id}/actions/archive', 'restore': '/automation/automations/{automation_id}/actions/restore' } href = HrefField(read_only=True) id = UuidField(read_only=True) name = StringField(read_only=False) description = StringField(read_only=False) billing_group = UuidField(read_only=False) owner = StringField(read_only=True) created_by = StringField(read_only=True) created_on = DateTimeField(read_only=True) modified_by = StringField(read_only=True) modified_on = DateTimeField(read_only=False) archived = BooleanField(read_only=True) secret_settings = DictField(read_only=False) memory_limit = IntegerField(read_only=False) project_based = BooleanField(read_only=False) def __eq__(self, other): if type(other) is not type(self): return False return self is other or self.id == other.id def __str__(self): return f'<Automation: id={self.id} name={self.name}>' @classmethod def query(cls, name=None, include_archived=False, project_based=None, offset=None, limit=None, api=None): """ Query (List) automations. :param name: Automation name. :param include_archived: Include archived automations also :param project_based: Search project based automations :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: collection object """ api = api or cls._API return super()._query( url=cls._URL['query'], name=name, include_archived=include_archived, project_based=project_based, offset=offset, limit=limit, api=api, ) @classmethod def create(cls, name, description=None, billing_group=None, secret_settings=None, project_based=None, memory_limit=None, api=None): """ Create a automation template. :param name: Automation name. :param billing_group: Automation billing group. :param description: Automation description. :param secret_settings: Automation settings. :param project_based: Create project based automation template. :param memory_limit: Memory limit in MB. :param api: Api instance. :return: """ api = api if api else cls._API if name is None: raise SbgError('Automation name is required!') data = { 'name': name, } if billing_group: data['billing_group'] = Transform.to_billing_group(billing_group) if description: data['description'] = description if secret_settings: data['secret_settings'] = secret_settings if project_based: data['project_based'] = project_based if memory_limit: data['memory_limit'] = memory_limit extra = {'resource': cls.__name__, 'query': data} logger.info('Creating automation template', extra=extra) automation_data = api.post(url=cls._URL['query'], data=data).json() return Automation(api=api, **automation_data) @inplace_reload def save(self, inplace=True): """ Saves all modification to the automation template on the server. :param inplace Apply edits on the current instance or get a new one. :return: Automation instance. """ modified_data = self._modified_data() if modified_data: extra = { 'resource': type(self).__name__, 'query': { 'id': self.id, 'modified_data': modified_data } } logger.info('Saving automation template', extra=extra) data = self._api.patch(url=self._URL['get'].format(id=self.id), data=modified_data).json() return Automation(api=self._api, **data) else: raise ResourceNotModified() @inplace_reload def archive(self): """ Archive automation :return: Automation instance. """ extra = { 'resource': type(self).__name__, 'query': { 'id': self.id, } } logger.info('Archive automation', extra=extra) automation_data = self._api.post(url=self._URL['archive'].format( automation_id=self.id)).json() return Automation(api=self._api, **automation_data) @inplace_reload def restore(self): """ Restore archived automation :return: Automation instance. """ extra = { 'resource': type(self).__name__, 'query': { 'id': self.id, } } logger.info('Restore archived automation', extra=extra) automation_data = self._api.post(url=self._URL['restore'].format( automation_id=self.id)).json() return Automation(api=self._api, **automation_data) def get_packages(self, offset=None, limit=None, api=None): """ Return list of packages that belong to this automation :param offset: Pagination offset. :param limit: Pagination limit. :param api: sevenbridges Api instance. :return: AutomationPackage collection """ api = api or self._API return AutomationPackage.query(automation=self.id, offset=offset, limit=limit, api=api) @classmethod def get_package(cls, package, api=None): """ Return specified automation member :param package: Automation Package Id :param api: sevenbridges Api instance. :return: AutomationMember object """ package_id = Transform.to_automation_package(package) api = api or cls._API return AutomationPackage.get(id=package_id, api=api) def add_package(self, version, file_path, schema, file_name=None, retry_count=RequestParameters.DEFAULT_RETRY_COUNT, timeout=RequestParameters.DEFAULT_TIMEOUT, part_size=None, api=None): """ Add a code package to automation template. :param version: The code package version. :param file_path: Path to the code package file to be uploaded. :param schema: IO schema for main step of execution. :param part_size: Size of upload part in bytes. :param file_name: Optional file name. :param retry_count: Upload retry count. :param timeout: Timeout for s3/google session. :param api: sevenbridges Api instance. :return: AutomationPackage """ api = api or self._API if version is None: raise SbgError('Code package version is required!') if file_path is None: raise SbgError('Code package file path is required!') # Multipart upload the code package: upload = CodePackageUpload(file_path, self.id, api=api, part_size=part_size, file_name=file_name, retry_count=retry_count, timeout=timeout) upload.start() upload.wait() package_file = upload.result() # Create the automation package: return AutomationPackage.create(self.id, version=version, location=package_file.id, schema=schema, api=api) def get_member(self, username, api=None): """ Return specified automation member :param username: Member username :param api: sevenbridges Api instance. :return: AutomationMember object """ member = Transform.to_automation_member(username) api = api or self._API return AutomationMember.get(id=member, automation=self.id, api=api) def get_members(self, offset=None, limit=None, api=None): """ Return list of automation members :param offset: Pagination offset. :param limit: Pagination limit. :param api: sevenbridges Api instance. :return: AutomationMember collection """ api = api or self._API return AutomationMember.query(automation=self.id, offset=offset, limit=limit, api=api) def add_member(self, user, permissions, api=None): """ Add member to the automation :param user: Member username :param permissions: Member permissions :param api: sevenbridges Api instance :return: AutomationMember object """ api = api or self._API return AutomationMember.add(automation=self.id, user=user, permissions=permissions, api=api) def remove_member(self, user, api=None): """ Remove a member from the automation :param user: Member username :param api: sevenbridges Api instance :return: None """ api = api or self._API AutomationMember.remove(automation=self.id, user=user, api=api) def get_runs(self, package=None, status=None, name=None, created_by=None, created_from=None, created_to=None, project_id=None, order_by=None, order=None, offset=None, limit=None, api=None): """ Query automation runs that belong to this automation :param package: Package id :param status: Run status :param name: Automation run name :param created_by: Username of member that created the run :param created_from: Date the run was created after :param created_to: Date the run was created before :param project_id: Search runs by project id, if run is project based :param order_by: Property by which to order results :param order: Ascending or Descending ("asc" or "desc") :param offset: Pagination offset. :param limit: Pagination limit. :param api: sevenbridges Api instance :return: AutomationRun collection """ api = api or self._API return AutomationRun.query(automation=self.id, package=package, status=status, name=name, created_by=created_by, created_from=created_from, created_to=created_to, project_id=project_id, order_by=order_by, order=order, offset=offset, limit=limit, api=api)
class AutomationMember(Resource): """ Central resource for managing automation members. """ _URL = { 'query': '/automation/automations/{automation_id}/members', 'get': '/automation/automations/{automation_id}/members/{id}', } href = HrefField(read_only=True) id = StringField(read_only=True) username = StringField(read_only=True) email = StringField(read_only=True) type = StringField(read_only=True) name = StringField(read_only=True) permissions = CompoundField(Permissions, read_only=False) def __eq__(self, other): if type(other) is not type(self): return False return self is other or self.username == other.username def __str__(self): return f'<AutomationMember: username={self.username}>' @classmethod def query(cls, automation=None, offset=None, limit=None, api=None): """ Query (List) apps. :param automation: Automation id. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: collection object """ automation_id = Transform.to_automation(automation) api = api or cls._API return super()._query( url=cls._URL['query'].format(automation_id=automation_id), automation_id=automation_id, offset=offset, limit=limit, api=api, ) # noinspection PyMethodOverriding @classmethod def get(cls, id, automation, api=None): """ Fetches the resource from the server. :param id: Automation member username :param automation: Automation id or object :param api: sevenbridges Api instance. :return: AutomationMember object. """ username = Transform.to_resource(id) automation = Transform.to_automation(automation) api = api or cls._API member = api.get(url=cls._URL['get'].format(automation_id=automation, id=username)).json() return AutomationMember(api=api, **member) @classmethod def add(cls, user, permissions, automation, api=None): """ Add a member to the automation. :param user: Member username :param permissions: Permissions dictionary. :param automation: Automation object or id :param api: sevenbridges Api instance :return: Automation member object. """ user = Transform.to_user(user) automation = Transform.to_automation(automation) api = api or cls._API data = {'username': user} if isinstance(permissions, dict): data.update({'permissions': permissions}) member_data = api.post( url=cls._URL['query'].format(automation_id=automation), data=data).json() return AutomationMember(api=api, **member_data) @classmethod def remove(cls, user, automation, api=None): """ Remove a member from the automation. :param user: Member username :param automation: Automation id :param api: sevenbridges Api instance :return: None """ user = Transform.to_user(user) automation = Transform.to_automation(automation) api = api or cls._API api.delete(cls._URL['get'].format(automation_id=automation, id=user)) @inplace_reload def save(self, inplace=True): """ Saves modification to the api server. """ modified = self._modified_data() if modified: new_data = self.permissions.copy() new_data.update(modified['permissions']) data = {'permissions': new_data} url = self.href self._api.patch(url=url, data=data, append_base=False) else: raise ResourceNotModified()
class Project(Resource): """ Central resource for managing projects. """ _URL = { 'query': '/projects/{owner}', 'create': '/projects', 'get': '/projects/{id}', 'delete': '/projects/{id}', 'member': '/projects/{id}/members/{username}', 'members_query': '/projects/{id}/members', 'apps': '/apps', 'files': '/files', 'tasks': '/tasks' } href = HrefField() id = StringField(read_only=True) name = StringField(read_only=False) billing_group = UuidField(read_only=False) description = StringField(read_only=False) type = StringField(read_only=False, max_length=2) tags = BasicListField(read_only=False) settings = CompoundField(Settings, read_only=False) root_folder = StringField(read_only=True) created_by = StringField(read_only=True) created_on = DateTimeField(read_only=True) modified_on = DateTimeField(read_only=True) def __str__(self): return six.text_type('<Project: id={id}>'.format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) @classmethod def query(cls, owner=None, name=None, offset=None, limit=None, api=None): """ Query (List) projects :param owner: Owner username. :param name: Project name :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: Collection object. """ api = api if api else cls._API query_params = {} if owner: url = cls._URL['query'].format(owner=owner) else: url = cls._URL['query'].format(owner='') if name: query_params['name'] = name return super(Project, cls)._query(url=url, offset=offset, limit=limit, fields='_all', api=api, **query_params) @classmethod def create(cls, name, billing_group=None, description=None, tags=None, settings=None, api=None): """ Create a project. :param name: Project name. :param billing_group: Project billing group. :param description: Project description. :param tags: Project tags. :param settings: Project settings. :param api: Api instance. :return: """ api = api if api else cls._API if name is None: raise SbgError('Project name is required!') data = { 'name': name, } if billing_group: data['billing_group'] = Transform.to_billing_group(billing_group) if description: data['description'] = description if tags: data['tags'] = tags if settings: data['settings'] = settings extra = {'resource': cls.__name__, 'query': data} logger.info('Creating project', extra=extra) project_data = api.post(url=cls._URL['create'], data=data).json() return Project(api=api, **project_data) @inplace_reload def save(self, inplace=True): """ Saves all modification to the project on the server. :param inplace Apply edits on the current instance or get a new one. :return: Project instance. """ modified_data = self._modified_data() if bool(modified_data): extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'modified_data': modified_data } } logger.info('Saving project', extra=extra) data = self._api.patch(url=self._URL['get'].format(id=self.id), data=modified_data).json() project = Project(api=self._api, **data) return project else: raise ResourceNotModified() def get_members(self, offset=None, limit=None): """ Retrieves project members. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ extra = {'resource': self.__class__.__name__, 'query': {'id': self.id}} logger.info('Get members', extra=extra) response = self._api.get( url=self._URL['members_query'].format(id=self.id), params={ 'offset': offset, 'limit': limit }) data = response.json() total = response.headers['x-total-matching-query'] members = [Member(api=self._api, **member) for member in data['items']] links = [Link(**link) for link in data['links']] href = data['href'] return Collection(resource=Member, href=href, total=total, items=members, links=links, api=self._api) def add_member(self, user, permissions): """ Add a member to the project. :param user: Member username :param permissions: Permissions dictionary. :return: Member object. """ user = Transform.to_user(user) data = {'username': user, 'type': 'USER'} if isinstance(permissions, dict): data.update({'permissions': permissions}) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data, } } logger.info('Adding member using username', extra=extra) response = self._api.post( url=self._URL['members_query'].format(id=self.id), data=data) member_data = response.json() return Member(api=self._api, **member_data) def add_member_team(self, team, permissions): """ Add a member (team) to a project. :param team: Team object or team identifier. :param permissions: Permissions dictionary. :return: Member object. """ team = Transform.to_team(team) data = {'id': team, 'type': 'TEAM'} if isinstance(permissions, dict): data.update({'permissions': permissions}) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data, } } logger.info('Adding team member using team id', extra=extra) response = self._api.post( url=self._URL['members_query'].format(id=self.id), data=data) member_data = response.json() return Member(api=self._api, **member_data) def add_member_division(self, division, permissions): """ Add a member (team) to a project. :param division: Division object or division identifier. :param permissions: Permissions dictionary. :return: Member object. """ division = Transform.to_division(division) data = {'id': division, 'type': 'DIVISION'} if isinstance(permissions, dict): data.update({'permissions': permissions}) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data, } } logger.info('Adding team member using division id', extra=extra) response = self._api.post( url=self._URL['members_query'].format(id=self.id), data=data) member_data = response.json() return Member(api=self._api, **member_data) def add_member_email(self, email, permissions=None): """ Add a member to the project using member email. :param email: Member email. :param permissions: Permissions dictionary. :return: Member object. """ data = {'email': email} if isinstance(permissions, dict): data.update({'permissions': permissions}) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data, } } logger.info('Adding member using email', extra=extra) response = self._api.post( url=self._URL['members_query'].format(id=self.id), data=data) member_data = response.json() return Member(api=self._api, **member_data) def get_member(self, username, api=None): """ Fetches information about a single project member :param username: Member name :param api: Api instance :return: Member object """ api = api if api else self._API response = api.get(url=self._URL['member'].format(id=self.id, username=username), ) data = response.json() return Member(api=api, **data) def remove_member(self, user): """ Remove member from the project. :param user: User to be removed. """ username = Transform.to_user(user) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'user': user, } } logger.info('Removing member', extra=extra) self._api.delete( url=self._URL['member'].format(id=self.id, username=username)) def get_files(self, offset=None, limit=None): """ Retrieves files in this project. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ params = {'project': self.id, 'offset': offset, 'limit': limit} return self._api.files.query(api=self._api, **params) def add_files(self, files): """ Adds files to this project. :param files: List of files or a Collection object. """ for file in files: file.copy(project=self.id) def get_apps(self, offset=None, limit=None): """ Retrieves apps in this project. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ params = {'project': self.id, 'offset': offset, 'limit': limit} return self._api.apps.query(api=self._api, **params) def get_tasks(self, status=None, offset=None, limit=None): """ Retrieves tasks in this project. :param status: Optional task status. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ params = {'project': self.id, 'offset': offset, 'limit': limit} if status: params['status'] = status return self._api.tasks.query(api=self._api, **params) def get_imports(self, volume=None, state=None, offset=None, limit=None): """ Fetches imports for this project. :param volume: Optional volume identifier. :param state: Optional state. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ return self._api.imports.query(project=self.id, volume=volume, state=state, offset=offset, limit=limit) def get_exports(self, volume=None, state=None, offset=None, limit=None): """ Fetches exports for this volume. :param volume: Optional volume identifier. :param state: Optional state. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ return self._api.exports.query(project=self.id, volume=volume, state=state, offset=offset, limit=limit) def create_task(self, name, app, revision=None, batch_input=None, batch_by=None, inputs=None, description=None, run=False, disable_batch=False, interruptible=True, execution_settings=None): """ Creates a task for this project. :param name: Task name. :param app: CWL app identifier. :param revision: CWL app revision. :param batch_input: Batch input. :param batch_by: Batch criteria. :param inputs: Input map. :param description: Task description. :param run: True if you want to run a task upon creation. :param disable_batch: True if you want to disable batching. :param interruptible: True if you want to use interruptible instances. :param execution_settings: Execution settings for the task. :return: Task object. """ return self._api.tasks.create(name=name, project=self, app=app, revision=revision, batch_input=batch_input, batch_by=batch_by, inputs=inputs, description=description, run=run, disable_batch=disable_batch, interruptible=interruptible, execution_settings=execution_settings)
class File(Resource): """ Central resource for managing files. """ FOLDER_TYPE = 'folder' _URL = { 'query': '/files', 'scroll': '/files/scroll', 'get': '/files/{id}', 'delete': '/files/{id}', 'copy': '/files/{id}/actions/copy', 'download_info': '/files/{id}/download_info', 'metadata': '/files/{id}/metadata', 'tags': '/files/{id}/tags', 'bulk_get': '/bulk/files/get', 'bulk_delete': '/bulk/files/delete', 'bulk_update': '/bulk/files/update', 'bulk_edit': '/bulk/files/edit', 'create_folder': '/files', 'list_folder': '/files/{id}/list', 'scroll_folder': '/files/{id}/scroll', 'copy_to_folder': '/files/{file_id}/actions/copy', 'move_to_folder': '/files/{file_id}/actions/move', } href = HrefField() id = StringField(read_only=True) type = StringField(read_only=True) name = StringField() size = IntegerField(read_only=True) parent = StringField(read_only=True) project = StringField(read_only=True) created_on = DateTimeField(read_only=True) modified_on = DateTimeField(read_only=True) origin = CompoundField(FileOrigin, read_only=True) storage = CompoundField(FileStorage, read_only=True) metadata = CompoundField(Metadata) tags = BasicListField() _secondary_files = BasicListField(name='_secondary_files') def __str__(self): return six.text_type('<File: id={id}>'.format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) def is_folder(self): return self.type.lower() == self.FOLDER_TYPE @property def secondary_files(self): if self._secondary_files: return [ File(api=self._api, **data) for data in self._secondary_files ] @classmethod def query(cls, project=None, names=None, metadata=None, origin=None, tags=None, offset=None, limit=None, dataset=None, api=None, parent=None, cont_token=None): """ Query ( List ) files, requires project or dataset :param project: Project id :param names: Name list :param metadata: Metadata query dict :param origin: Origin query dict :param tags: List of tags to filter on :param offset: Pagination offset :param limit: Pagination limit :param dataset: Dataset id :param api: Api instance. :param parent: Folder id or File object with type folder :param cont_token: Pagination continuation token :return: Collection object. """ if cont_token and offset: raise SbgError( 'Offset and continuation token parameters' 'are mutually exclusive.' ) if cont_token and metadata: raise SbgError( 'Metadata filtering cannot be combined ' 'with continuation token pagination.' ) api = api or cls._API query_params = {} if project: project = Transform.to_project(project) query_params['project'] = project if dataset: dataset = Transform.to_dataset(dataset) query_params['dataset'] = dataset if parent: query_params['parent'] = Transform.to_file(parent) if not (project or dataset or parent): raise SbgError('Project, dataset or parent must be provided.') if [project, parent, dataset].count(None) < 2: raise SbgError( 'Only one out of project, parent or dataset must be provided.' ) if names is not None and isinstance(names, list): if len(names) == 0: names.append("") query_params['name'] = names metadata_params = {} if metadata and isinstance(metadata, dict): for k, v in metadata.items(): metadata_params['metadata.' + k] = metadata[k] if tags: query_params['tag'] = tags query_params.update(metadata_params) origin_params = {} if origin and isinstance(origin, dict): for k, v in origin.items(): origin_params['origin.' + k] = origin[k] query_params.update(origin_params) return super(File, cls)._query( api=api, url=cls._URL['scroll' if cont_token else 'query'], token=cont_token, offset=offset, limit=limit, fields='_all', **query_params ) @classmethod def upload(cls, path, project=None, parent=None, file_name=None, overwrite=False, retry=5, timeout=60, part_size=None, wait=True, api=None): """ Uploads a file using multipart upload and returns an upload handle if the wait parameter is set to False. If wait is set to True it will block until the upload is completed. :param path: File path on local disc. :param project: Project identifier :param parent: Parent folder identifier :param file_name: Optional file name. :param overwrite: If true will overwrite the file on the server. :param retry: Number of retries if error occurs during upload. :param timeout: Timeout for http requests. :param part_size: Part size in bytes. :param wait: If true will wait for upload to complete. :param api: Api instance. """ api = api or cls._API extra = {'resource': cls.__name__, 'query': { 'path': path, 'project': project, 'file_name': file_name, 'overwrite': overwrite, 'retry': retry, 'timeout': timeout, 'part_size': part_size, 'wait': wait, }} logger.info('Uploading file', extra=extra) if not project and not parent: raise SbgError('A project or parent identifier is required.') if project and parent: raise SbgError( 'Project and parent identifiers are mutually exclusive.' ) if project: project = Transform.to_project(project) if parent: parent = Transform.to_file(parent) upload = Upload( file_path=path, project=project, parent=parent, file_name=file_name, overwrite=overwrite, retry_count=retry, timeout=timeout, part_size=part_size, api=api ) if wait: upload.start() upload.wait() return upload else: return upload def copy(self, project, name=None): """ Copies the current file. :param project: Destination project. :param name: Destination file name. :return: Copied File object. """ project = Transform.to_project(project) data = { 'project': project } if name: data['name'] = name extra = {'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data }} logger.info('Copying file', extra=extra) new_file = self._api.post(url=self._URL['copy'].format(id=self.id), data=data).json() return File(api=self._api, **new_file) def download_info(self): """ Fetches download information containing file url that can be used to download file. :return: Download info object. """ info = self._api.get(url=self._URL['download_info'].format(id=self.id)) return DownloadInfo(api=self._api, **info.json()) def download(self, path, retry=5, timeout=10, chunk_size=PartSize.DOWNLOAD_MINIMUM_PART_SIZE, wait=True, overwrite=False): """ Downloads the file and returns a download handle. Download will not start until .start() method is invoked. :param path: Full path to the new file. :param retry: Number of retries if error occurs during download. :param timeout: Timeout for http requests. :param chunk_size: Chunk size in bytes. :param wait: If true will wait for download to complete. :param overwrite: If True will silently overwrite existing file. :return: Download handle. """ if not overwrite and os.path.exists(path): raise LocalFileAlreadyExists(message=path) extra = {'resource': self.__class__.__name__, 'query': { 'id': self.id, 'path': path, 'overwrite': overwrite, 'retry': retry, 'timeout': timeout, 'chunk_size': chunk_size, 'wait': wait, }} logger.info('Downloading file', extra=extra) info = self.download_info() download = Download( url=info.url, file_path=path, retry_count=retry, timeout=timeout, part_size=chunk_size, api=self._api ) if wait: download.start() download.wait() else: return download @inplace_reload def save(self, inplace=True, silent=False): """ Saves all modification to the file on the server. By default this method raises an error if you are trying to save an instance that was not changed. Set check_if_modified param to False to disable this behaviour. :param inplace: Apply edits to the current instance or get a new one. :param silent: If Raises exception if file wasn't modified. :raise ResourceNotModified :return: File instance. """ modified_data = self._modified_data() if silent or bool(modified_data): # If metadata is to be set if 'metadata' in modified_data: if hasattr(self, '_overwrite_metadata'): self._api.put( url=self._URL['metadata'].format(id=self.id), data=modified_data['metadata'] ) delattr(self, '_overwrite_metadata') else: self._api.patch( url=self._URL['metadata'].format(id=self.id), data=modified_data['metadata'] ) modified_data.pop('metadata') if 'tags' in modified_data: self._api.put( url=self._URL['tags'].format(id=self.id), data=modified_data['tags'] ) modified_data.pop('tags') # Change everything else if bool(modified_data): self._api.patch( url=self._URL['get'].format(id=self.id), data=modified_data ) else: raise ResourceNotModified() return self.reload() def stream(self, part_size=32 * PartSize.KB): """ Creates an iterator which can be used to stream the file content. :param part_size: Size of the part in bytes. Default 32KB :return Iterator """ download_info = self.download_info() response = self._api.get( url=download_info.url, stream=True, append_base=False ) for part in response.iter_content(part_size): yield part # noinspection PyAttributeOutsideInit def reload(self): """ Refreshes the file with the data from the server. """ try: data = self._api.get(self.href, append_base=False).json() resource = File(api=self._api, **data) except Exception: try: data = self._api.get( self._URL['get'].format(id=self.id)).json() resource = File(api=self._api, **data) except Exception as e: raise SbgError( 'Resource can not be refreshed due to an error: {}' .format(six.text_type(e)) ) self._data = resource._data self._dirty = resource._dirty self.update_old() # If file.metadata = value was executed # file object will have attribute _overwrite_metadata=True, # which tells us to force overwrite of metadata on the server. # This is metadata specific. Once we reload the resource we delete the # attribute _overwrite_metadata from the instance. try: delattr(self, '_overwrite_metadata') except AttributeError: pass def content(self, path=None, overwrite=True, encoding='utf-8'): """ Downloads file to the specified path or as temporary file and reads the file content in memory. Should not be used on very large files. :param path: Path for file download If omitted tmp file will be used. :param overwrite: Overwrite file if exists locally :param encoding: File encoding, by default it is UTF-8 :return: File content. """ if path: self.download(wait=True, path=path, overwrite=overwrite) with io.open(path, 'r', encoding=encoding) as fp: return fp.read() with tempfile.NamedTemporaryFile() as tmpfile: self.download(wait=True, path=tmpfile.name, overwrite=overwrite) with io.open(tmpfile.name, 'r', encoding=encoding) as fp: return fp.read() @classmethod def bulk_get(cls, files, api=None): """ Retrieve files with specified ids in bulk :param files: Files to be retrieved. :param api: Api instance. :return: List of FileBulkRecord objects. """ api = api or cls._API file_ids = [Transform.to_file(file_) for file_ in files] data = {'file_ids': file_ids} logger.debug('Getting files in bulk.') response = api.post(url=cls._URL['bulk_get'], data=data) return FileBulkRecord.parse_records(response=response, api=api) @classmethod def bulk_delete(cls, files, api=None): """ Delete files with specified ids in bulk :param files: Files to be deleted. :param api: Api instance. :return: List of FileBulkRecord objects. """ api = api or cls._API file_ids = [Transform.to_file(file_) for file_ in files] data = {'file_ids': file_ids} logger.debug('Deleting files in bulk.') response = api.post(url=cls._URL['bulk_delete'], data=data) return FileBulkRecord.parse_records(response=response, api=api) @classmethod def bulk_update(cls, files, api=None): """ This call updates the details for multiple specified files. Use this call to set new information for the files, thus replacing all existing information and erasing omitted parameters. For each of the specified files, the call sets a new name, new tags and metadata. :param files: List of file instances. :param api: Api instance. :return: List of FileBulkRecord objects. """ if not files: raise SbgError('Files are required.') api = api or cls._API data = { 'items': [ { 'id': file_.id, 'name': file_.name, 'tags': file_.tags, 'metadata': file_.metadata, } for file_ in files ] } logger.debug('Updating files in bulk.') response = api.post(url=cls._URL['bulk_update'], data=data) return FileBulkRecord.parse_records(response=response, api=api) @classmethod def bulk_edit(cls, files, api=None): """ This call edits the details for multiple specified files. Use this call to modify the existing information for the files or add new information while preserving omitted parameters. For each of the specified files, the call edits its name, tags and metadata. :param files: List of file instances. :param api: Api instance. :return: List of FileBulkRecord objects. """ if not files: raise SbgError('Files are required.') api = api or cls._API data = { 'items': [ { 'id': file_.id, 'name': file_.name, 'tags': file_.tags, 'metadata': file_.metadata, } for file_ in files ] } logger.debug('Editing files in bulk.') response = api.post(url=cls._URL['bulk_edit'], data=data) return FileBulkRecord.parse_records(response=response, api=api) def list_files(self, offset=None, limit=None, api=None, cont_token=None): """List files in a folder :param api: Api instance :param offset: Pagination offset :param limit: Pagination limit :param cont_token: Pagination continuation token :return: List of files """ if cont_token and offset: raise SbgError( 'Offset and continuation token parameters' 'are mutually exclusive.' ) api = api or self._API if not self.is_folder(): raise SbgError('{name} is not a folder'.format(name=self.name)) url = self._URL[ 'scroll_folder' if cont_token else 'list_folder' ].format(id=self.id) return super(File, self.__class__)._query( api=api, url=url, token=cont_token, offset=offset, limit=limit, fields='_all' ) @classmethod def create_folder(cls, name, parent=None, project=None, api=None): """Create a new folder :param name: Folder name :param parent: Parent folder :param project: Project to create folder in :param api: Api instance :return: New folder """ api = api or cls._API data = { 'name': name, 'type': cls.FOLDER_TYPE } if not parent and not project: raise SbgError('Parent or project must be provided') if parent and project: raise SbgError( 'Providing both "parent" and "project" is not allowed' ) if parent: data['parent'] = Transform.to_file(file_=parent) if project: data['project'] = Transform.to_project(project=project) response = api.post(url=cls._URL['create_folder'], data=data).json() return cls(api=api, **response) def copy_to_folder(self, parent, name=None, api=None): """Copy file to folder :param parent: Folder to copy file to :param name: New file name :param api: Api instance :return: New file instance """ api = api or self._API if self.is_folder(): raise SbgError('Copying folders is not supported') data = { 'parent': Transform.to_file(parent) } if name: data['name'] = name response = api.post( url=self._URL['copy_to_folder'].format(file_id=self.id), data=data ).json() return File(api=api, **response) def move_to_folder(self, parent, name=None, api=None): """Move file to folder :param parent: Folder to move file to :param name: New file name :param api: Api instance :return: New file instance """ api = api or self._API if self.is_folder(): raise SbgError('Moving folders is not supported') data = { 'parent': Transform.to_file(parent) } if name: data['name'] = name response = api.post( url=self._URL['move_to_folder'].format(file_id=self.id), data=data ).json() return File(api=api, **response)
class Team(Resource): """ Central resource for managing teams. """ _URL = { 'query': '/teams', 'get': '/teams/{id}', 'members_query': '/teams/{id}/members', 'members_get': '/teams/{id}/members/{member}', } href = HrefField() id = StringField(read_only=True) name = StringField(read_only=False) def __str__(self): return six.text_type('<Team: id={id}>'.format(id=self.id)) def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) @classmethod def query(cls, division, list_all=False, offset=None, limit=None, api=None): """ :param division: Division slug. :param list_all: List all teams in division. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: Collection object. """ division = Transform.to_division(division) api = api if api else cls._API return super(Team, cls)._query(url=cls._URL['query'], division=division, _all=list_all, offset=offset, limit=limit, fields='_all', api=api) @classmethod def create(cls, name, division, api=None): """ Create team within a division :param name: Team name. :param division: Parent division. :param api: Api instance. :return: Team object. """ division = Transform.to_division(division) api = api if api else cls._API data = {'name': name, 'division': division} extra = {'resource': cls.__name__, 'query': data} logger.info('Creating team', extra=extra) created_team = api.post(cls._URL['query'], data=data).json() return Team(api=api, **created_team) @inplace_reload def save(self, inplace=True): """ Saves all modification to the team on the server. :param inplace Apply edits on the current instance or get a new one. :return: Team instance. """ modified_data = self._modified_data() if bool(modified_data): extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'modified_data': modified_data } } logger.info('Saving team', extra=extra) data = self._api.patch(url=self._URL['get'].format(id=self.id), data=modified_data).json() team = Team(api=self._api, **data) return team else: raise ResourceNotModified() def get_members(self, offset=None, limit=None): """ Fetch team members for current team. :param offset: Pagination offset. :param limit: Pagination limit. :return: Collection object. """ extra = {'resource': self.__class__.__name__, 'query': {'id': self.id}} logger.info('Get team members', extra=extra) response = self._api.get( url=self._URL['members_query'].format(id=self.id), params={ 'offset': offset, 'limit': limit }) data = response.json() total = response.headers['x-total-matching-query'] members = [ TeamMember(api=self._api, **member) for member in data['items'] ] links = [Link(**link) for link in data['links']] href = data['href'] return Collection(resource=TeamMember, href=href, total=total, items=members, links=links, api=self._api) def add_member(self, user): """ Add member to team :param user: User object or user's username :return: Added user. """ user = Transform.to_user(user) data = {'id': user} extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data, } } logger.info('Adding team member using id', extra=extra) response = self._api.post( url=self._URL['members_query'].format(id=self.id), data=data) member_data = response.json() return TeamMember(api=self._api, **member_data) def remove_member(self, user): """ Remove member from the team. :param user: User to be removed. """ member = Transform.to_user(user) extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'user': user, } } logger.info('Removing team member', extra=extra) self._api.delete( url=self._URL['members_get'].format(id=self.id, member=member)) @classmethod def get(cls, id, api=None): return super(Team, cls).get(id) def delete(self): return super(Team, self).delete() def reload(self): super(Team, self).reload()
class App(Resource): """ Central resource for managing apps. """ _URL = { 'query': '/apps', 'get': '/apps/{id}', 'get_revision': '/apps/{id}/{revision}', 'create_revision': '/apps/{id}/{revision}/raw', 'copy': '/apps/{id}/actions/copy', 'sync': '/apps/{id}/actions/sync', 'raw': '/apps/{id}/raw' } _CONTENT_TYPE = { AppRawFormat.JSON: 'application/json', AppRawFormat.YAML: 'application/yaml' } href = HrefField() _id = StringField(read_only=True, name='id') project = StringField(read_only=True) name = StringField(read_only=True) revision = IntegerField(read_only=True) raw = DictField(read_only=False) @property def id(self): _id, _rev = self._id.rsplit('/', 1) if re.match('^\d*$', _rev): return _id else: return self._id def __eq__(self, other): if not hasattr(other, '__class__'): return False if not self.__class__ == other.__class__: return False return self is other or self.id == other.id def __ne__(self, other): return not self.__eq__(other) def __str__(self): return six.text_type('<App: id={id} rev={rev}>'.format( id=self.id, rev=self.revision)) @classmethod def query(cls, project=None, visibility=None, q=None, id=None, offset=None, limit=None, api=None): """ Query (List) apps. :param project: Source project. :param visibility: private|public for private or public apps. :param q: List containing search terms. :param id: List contains app ids. Fetch apps with specific ids. :param offset: Pagination offset. :param limit: Pagination limit. :param api: Api instance. :return: collection object """ if project: project = Transform.to_project(project) api = api or cls._API return super(App, cls)._query(url=cls._URL['query'], project=project, visibility=visibility, q=q, id=id, offset=offset, limit=limit, api=api) @classmethod def get_revision(cls, id, revision, api=None): """ Get app revision. :param id: App identifier. :param revision: App revision :param api: Api instance. :return: App object. """ api = api if api else cls._API extra = { 'resource': cls.__name__, 'query': { 'id': id, 'revision': revision } } logger.info('Get revision', extra=extra) app = api.get(url=cls._URL['get_revision'].format( id=id, revision=revision)).json() return App(api=api, **app) @classmethod def install_app(cls, id, raw, api=None, raw_format=None): """ Installs and app. :param id: App identifier. :param raw: Raw cwl data. :param api: Api instance. :param raw_format: Format of raw app data being sent, json by default :return: App object. """ api = api if api else cls._API raw_format = raw_format.lower() if raw_format else AppRawFormat.JSON extra = {'resource': cls.__name__, 'query': {'id': id, 'data': raw}} logger.info('Installing app', extra=extra) # Set content type for raw app data if raw_format not in cls._CONTENT_TYPE.keys(): raise SbgError( 'Unsupported raw data format: "{}".'.format(raw_format)) headers = {'Content-Type': cls._CONTENT_TYPE[raw_format]} app = api.post( url=cls._URL['raw'].format(id=id), data=raw, headers=headers, ).json() app_wrapper = api.get(url=cls._URL['get'].format( id=app['sbg:id'])).json() return App(api=api, **app_wrapper) @classmethod def create_revision(cls, id, revision, raw, api=None): """ Create a new app revision. :param id: App identifier. :param revision: App revision. :param raw: Raw cwl object. :param api: Api instance. :return: App object. """ api = api if api else cls._API extra = {'resource': cls.__name__, 'query': {'id': id, 'data': raw}} logger.info('Creating app revision', extra=extra) app = api.post(url=cls._URL['create_revision'].format( id=id, revision=revision), data=raw).json() app_wrapper = api.get(url=cls._URL['get'].format( id=app['sbg:id'])).json() return App(api=api, **app_wrapper) def copy(self, project, name=None, strategy=None): """ Copies the current app. :param project: Destination project. :param name: Destination app name. :param strategy: App copy strategy. :return: Copied App object. :Copy strategies: clone copy all revisions and continue getting updates form the original app (default method when the key is omitted) direct copy only the latest revision and get the updates from this point on clone_direct copy the app like the direct strategy, but keep all revisions transient copy only the latest revision and continue getting updates from the original app """ strategy = strategy or AppCopyStrategy.CLONE project = Transform.to_project(project) data = {'project': project, 'strategy': strategy} if name: data['name'] = name extra = { 'resource': self.__class__.__name__, 'query': { 'id': self.id, 'data': data } } logger.info('Copying app', extra=extra) app = self._api.post(url=self._URL['copy'].format(id=self.id), data=data).json() return App(api=self._api, **app) def sync(self): """ Syncs the parent app changes with the current app instance. :return: Synced App object. """ app = self._api.post(url=self._URL['sync'].format(id=self.id)).json() return App(api=self._api, **app)
class File(Resource): """ Central resource for managing files. """ _URL = { 'query': '/files', 'get': '/files/{id}', 'delete': '/files/{id}', 'copy': '/files/{id}/actions/copy', 'download_info': '/files/{id}/download_info', 'metadata': '/files/{id}/metadata', 'tags': '/files/{id}/tags' } href = HrefField() id = StringField() name = StringField(read_only=False) size = IntegerField(read_only=True) project = StringField(read_only=True) created_on = DateTimeField(read_only=True) modified_on = DateTimeField(read_only=True) origin = CompoundField(FileOrigin, read_only=True) storage = CompoundField(FileStorage, read_only=True) metadata = CompoundField(Metadata, read_only=False) tags = BasicListField(read_only=False) def __str__(self): return six.text_type('<File: id={id}>'.format(id=self.id)) @classmethod def query(cls, project, names=None, metadata=None, origin=None, offset=None, limit=None, api=None): """ Query ( List ) projects :param project: Project id :param names: Name list :param metadata: Metadata query dict :param origin: Origin query dict :param offset: Pagination offset :param limit: Pagination limit :param api: Api instance. :return: Collection object. """ api = api or cls._API project = Transform.to_project(project) query_params = {} if names and isinstance(names, list): query_params['name'] = names metadata_params = {} if metadata and isinstance(metadata, dict): for k, v in metadata.items(): metadata_params['metadata.' + k] = metadata[k] query_params.update(metadata_params) origin_params = {} if origin and isinstance(origin, dict): for k, v in origin.items(): origin_params['origin.' + k] = origin[k] query_params.update(origin_params) return super(File, cls)._query( api=api, url=cls._URL['query'], project=project, offset=offset, limit=limit, fields='_all', **query_params ) @classmethod def upload(cls, path, project, file_name=None, overwrite=False, retry=5, timeout=10, part_size=PartSize.UPLOAD_MINIMUM_PART_SIZE, wait=True, api=None): """ Uploads a file using multipart upload and returns an upload handle if the wait parameter is set to False. If wait is set to True it will block until the upload is completed. :param path: File path on local disc. :param project: Project identifier :param file_name: Optional file name. :param overwrite: If true will overwrite the file on the server. :param retry: Number of retries if error occurs during upload. :param timeout: Timeout for http requests. :param part_size: Part size in bytes. :param wait: If true will wait for upload to complete. :param api: Api instance. """ api = api or cls._API project = Transform.to_project(project) upload = Upload( path, project, file_name=file_name, overwrite=overwrite, retry_count=retry, timeout=timeout, part_size=part_size, api=api ) if wait: upload.start() upload.wait() return upload else: return upload def copy(self, project, name=None): """ Copies the current file. :param project: Destination project. :param name: Destination file name. :return: Copied File object. """ project = Transform.to_project(project) data = { 'project': project } if name: data['name'] = name new_file = self._api.post(url=self._URL['copy'].format(id=self.id), data=data).json() return File(api=self._api, **new_file) def download_info(self): """ Fetches download information containing file url that can be used to download file. :return: Download info object. """ info = self._api.get(url=self._URL['download_info'].format(id=self.id)) return DownloadInfo(api=self._api, **info.json()) def download(self, path, retry=5, timeout=10, chunk_size=PartSize.DOWNLOAD_MINIMUM_PART_SIZE, wait=True, overwrite=False): """ Downloads the file and returns a download handle. Download will not start until .start() method is invoked. :param path: Full path to the new file. :param retry: Number of retries if error occurs during download. :param timeout: Timeout for http requests. :param chunk_size: Chunk size in bytes. :param wait: If true will wait for download to complete. :param over_write: If True will silently overwrite existing file, otherwise OSError is raised :return: Download handle. """ if not overwrite and os.path.exists(path): raise LocalFileAlreadyExists(message=path) info = self.download_info() download = Download( url=info.url, file_path=path, retry_count=retry, timeout=timeout, part_size=chunk_size, api=self._api ) if wait: download.start() download.wait() else: return download @inplace_reload def save(self, inplace=True): """ Saves all modification to the file on the server. :param inplace Apply edits to the current instance or get a new one. :return: File instance. """ modified_data = self._modified_data() if bool(modified_data): # If metadata is to be set if 'metadata' in modified_data: try: _ = self._method self._api.put( url=self._URL['metadata'].format(id=self.id), data=modified_data['metadata'] ) except AttributeError: self._api.patch( url=self._URL['metadata'].format(id=self.id), data=modified_data['metadata'] ) modified_data.pop('metadata') if 'tags' in modified_data: self._api.put( url=self._URL['tags'].format(id=self.id), data=modified_data['tags'] ) modified_data.pop('tags') # Change everything else if bool(modified_data): self._api.patch( url=self._URL['get'].format(id=self.id), data=modified_data ) else: raise ResourceNotModified() return self.reload() def stream(self, part_size=32 * PartSize.KB): """ Creates an iterator which can be used to stream the file content. :param part_size: Size of the part in bytes. Default 32KB :return Iterator """ download_info = self.download_info() response = self._api.get( url=download_info.url, stream=True, append_base=False ) for part in response.iter_content(part_size): yield part # noinspection PyAttributeOutsideInit def reload(self): """ Refreshes the file with the data from the server. """ try: data = self._api.get(self.href, append_base=False).json() resource = File(api=self._api, **data) except Exception: try: data = self._api.get( self._URL['get'].format(id=self.id)).json() resource = File(api=self._api, **data) except Exception: raise SbgError('Resource can not be refreshed!') self._data = resource._data self._dirty = resource._dirty # If file.metadata = value was executed # file object will have attribute _method='PUT', which tells us # to force overwrite of metadata on the server. This is metadata # specific. Once we reload the resource we delete the attribute # _method from the instance. try: delattr(self, '_method') except AttributeError: pass