Please see the documentation for information on using the code within this repository.

Note that not all programs in this repository are currently covered by the documentation, and some programs are likely to be changed or removed.

The code within this repository is available under a 3-clause BSD license. See the License.txt file for more information.

If you use this documentation or the phyluce software for your own research, please cite:

Faircloth BC, McCormack JE, Crawford NG, Harvey MG, Brumfield RT, Glenn TC (2012). Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales. Systematic Biology 61: 717-726. pmid: 22232343 doi: 10.1093/sysbio/SYS004

Please also provide the link to this software repository in your manuscript:

https://github.com/faircloth-lab/phyluce