Application to work with images and other visual information.
The app contains a lot of plugins to preprocess and analyze segmentation results. Necessary plugins can be enabled/disabled using plugin manager.

python 3.10
pip install pyside6 ruamel-yaml numpy opencv-python scikit-image scipy sortedcontainers onnxruntime-gpu pandas nibabel pydicom slideio tifffile pytest toml cx-freeze

• Python 3.10+
• PySide6 6.5+: Python bindings for Qt, used for GUI and signal/slot mechanism.
• ruamel-yaml 0.17+: YAML parser and emitter for config files.

• numpy: Stores and processes image data.
• opencv-python: Provides optimized image processing algorithms.
• scikit-image: Wide range of image processing algorithms not in opencv-python (most often opencv-python methods have better performance).
• scipy: Mostly for data interpolation.
• sortedcontainers: Sorted collections library.

• Neural Network Inference

  • onnxruntime-gpu: Infers neural network models on GPUs and CPUs.

• Data Analysis and File Format Handling

  • pandas: Data analysis tool.
  • nibabel: Loads NIfTI files.
  • pydicom: Loads DICOM files.
  • slideio: Loads high-resolution medical slides (Whole Slide Imaging).
  • tifffile: Manages tiled multi-resolution (pyramid) TIFF files.

• Testing

  • pytest: Testing framework.

• Build and Packaging

  • toml: Configuration for PyPI packages.
  • cx-freeze: Creates standalone executables and installers.