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genomics-tools

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The projects in this repository are focused around the Google Genomics API:

client-go:
shows how easy it can be to call into the API with the Go programming language.
client-java:
provides a command line interface for API queries, and demonstrates how a more complex Java client might be written.
client-python:
provides an example web interface that depends on API queries, and demonstrates how a more complex Python client might be written. It uses Google App Engine to deploy.
client-r:
provides a simple R script that transforms API query results into GAlignments.
mapreduce-python:
uses the MapReduce Python feature of Google App Engine to do complex calculations over API data.
protobufs:
includes the protocol buffers used by the API. All client libraries, documentation, and output are auto generated from these files.
readstore-local-java:
implements the Genomics API locally, reading its data from a local BAM file.

Contributing changes

See CONTRIB.rst.

Licensing

See LICENSE.

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