Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
write_up		write_up
.gitignore		.gitignore
README.md		README.md
aux.py		aux.py
categorical.py		categorical.py
features.py		features.py
investigate.ipynb		investigate.ipynb
requirements.txt		requirements.txt
run_model.py		run_model.py

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BioInformatics CourseWork

Repo Structure

investigate.ipynb - an ipython notebook used to conduct experiments and generate plots. Final results are take from here.
features.py - code used to extract and convert sequence data into feature vectors.
categorical.py - code for implementation of the categorical benchmark, using inheritance from sci-kit learn.
aux.py - code for auxiliary subroutines such as loading files, and turning tuples of data into matrices.
run_model.py - code used to orchestrate the running of experiments, especially in development stage.
requirements.txt - a list of packages to be installed by pip, the python package manager
write_up - the directory for all latex related to this write up

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