GitHub - eshnil2000/dna-fountain: DNA-Fountain

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Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
test-input		test-input
.gitignore		.gitignore
COPYING		COPYING
Colorer.py		Colorer.py
INSTALL		INSTALL
README		README
aggressive.pyx		aggressive.pyx
decode.py		decode.py
dna-fountain-input-files.tar.gz		dna-fountain-input-files.tar.gz
dna-fountain-input-files.tar.gz.dna		dna-fountain-input-files.tar.gz.dna
droplet.pyx		droplet.pyx
encode.py		encode.py
fountain.pyx		fountain.pyx
glass.pyx		glass.pyx
in.tar.gz		in.tar.gz
in.tar.gz.dna		in.tar.gz.dna
lfsr.py		lfsr.py
other_screens.py		other_screens.py
output_DNA.txt		output_DNA.txt
preprocessing.py		preprocessing.py
receiver.py		receiver.py
requirements.txt		requirements.txt
robust_solition.pyx		robust_solition.pyx
setup.py		setup.py
utils.pyx		utils.pyx

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DNA-Fountain code
=================

This code is described in the following manuscript:

    Capacity-approaching DNA storage
    Yaniv Erlich, Dina Zielinski
    doi: http://dx.doi.org/10.1101/074237
    BioRxiv: http://biorxiv.org/content/early/2016/09/09/074237

Visit http://dnafountain.teamerlich.org/ for more information.

Contact: yaniv@cs.columbia.edu

License: GPLv3 (or later)

### Instructions
#### replace maketrans with str.maketrans
#### python setup.py build_ext --inplace
#### comment out from sets import Set
#### replace md5 with hashlib.md5
#### instead of adding "\0", convert to bytes ==> data += str.encode("\0") * pad #zero padding.
#### tar -b1 -czvvf info_to_code.tar.gz ./info_to_code/
#### truncate -s2116608 ./dna-fountain-input-files.tar.gz
#### python encode.py --file_in dna-fountain-input-files.tar.gz --size 32 -m 3 --gc 0.05 --rs 2 --delta 0.001 --c_dist 0.0125 --out dna-fountain-input-files.tar.gz.dna --stop 72000