ifiddes / mus_strain_cactus Public

forked from dentearl/mus_strain_cactus

Notifications You must be signed in to change notification settings
Fork 0
Star 0

Code, docs and experiments for the MSCA project.

0 stars 1 fork Branches Tags Activity

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 408 Commits
jobTree @ 945bd2b		jobTree @ 945bd2b
lib		lib
sonLib @ dbd8b2d		sonLib @ dbd8b2d
src		src
.gitignore		.gitignore
.gitmodules		.gitmodules
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md

Repository files navigation

mus_strain_cactus

This project builds a sqlite database from between-species transcript alignments.

Input includes:

A fasta representing the target genome.
A PSL aligning the query transcriptome to the target genome.
A BED file annotation for the query transcriptome.

About

Code, docs and experiments for the MSCA project.

Report repository

Releases

No releases published

Packages

No packages published

Languages

Python 99.6%
Makefile 0.4%