CS-176-HMM

All results are in their respective mu-1/, 2mu-1/, and 5mu-1/ directories!

-- Running the program -- usage: run.py [-h] input_sequences input_parameters output_estimated_parameters output_likelihoods output_initial_decodings output_estimated_decodings

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Collaborators: Kevin Simons Quinn Z Shen

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Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
2mu-1		2mu-1
2mu		2mu
5mu-1		5mu-1
5mu		5mu
example		example
mu-1		mu-1
mu		mu
.DS_Store		.DS_Store
.project		.project
.pydevproject		.pydevproject
2mu.py		2mu.py
5mu.py		5mu.py
BackwardsAlgorithm.py		BackwardsAlgorithm.py
BackwardsAlgorithm.pyc		BackwardsAlgorithm.pyc
EM.py		EM.py
EM.pyc		EM.pyc
EMRunner2Mu.py		EMRunner2Mu.py
EMRunner5 Mu.py		EMRunner5 Mu.py
EMRunnerMu.py		EMRunnerMu.py
ForwardAlgorithm.py		ForwardAlgorithm.py
ForwardAlgorithm.pyc		ForwardAlgorithm.pyc
README.md		README.md
Viterbi.py		Viterbi.py
Viterbi.pyc		Viterbi.pyc
helperFunctions.py		helperFunctions.py
helperFunctions.pyc		helperFunctions.pyc
main.py		main.py
main.pyc		main.pyc
mainForEM.py		mainForEM.py
mainForEM.pyc		mainForEM.pyc
mu.py		mu.py
plot.py		plot.py
run.py		run.py
sequences_2mu.fasta		sequences_2mu.fasta
sequences_5mu.fasta		sequences_5mu.fasta
sequences_mu.fasta		sequences_mu.fasta
true_tmrca.txt		true_tmrca.txt

ksimons221/CS-176-HMM

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