mht_selection

Scripts for detecting changes in selective pressures on mycoheterotroph plastid genes using paml

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
20181023_script_changelog_Nate.txt		20181023_script_changelog_Nate.txt
README.md		README.md
alignment_concatenator.py		alignment_concatenator.py
alignment_copier.sh		alignment_copier.sh
alignment_deleter.sh		alignment_deleter.sh
cat_relax_tree.sh		cat_relax_tree.sh
check-frame.py		check-frame.py
check-frame_parallel.sh		check-frame_parallel.sh
concatenate_alignments.sh		concatenate_alignments.sh
copier.sh		copier.sh
copy_alignments.sh		copy_alignments.sh
count_missing_green.py		count_missing_green.py
difference_list.py		difference_list.py
filter.py		filter.py
filter.sh		filter.sh
fix-trimal-names.sh		fix-trimal-names.sh
make-subtree.py		make-subtree.py
make-subtree.sh		make-subtree.sh
make_bf.py		make_bf.py
make_bf.sh		make_bf.sh
make_relax_tree.py		make_relax_tree.py
make_relax_tree.sh		make_relax_tree.sh
mkdirs.sh		mkdirs.sh
paml.py		paml.py
paml.sh		paml.sh
paml_alignment_viewer.py		paml_alignment_viewer.py
paml_branch_monocot-mht_CC_slurm.sh		paml_branch_monocot-mht_CC_slurm.sh
paml_stats.py		paml_stats.py
parallel_command_trim-terminal-stops.sh		parallel_command_trim-terminal-stops.sh
relax.sh		relax.sh
relax_run.bf		relax_run.bf
retrieve_paml_results.sh		retrieve_paml_results.sh
retrieve_relax_results.py		retrieve_relax_results.py
retrieve_relax_results.sh		retrieve_relax_results.sh
trim-gap-columns.sh		trim-gap-columns.sh
trim-terminal-stops.py		trim-terminal-stops.py

maggishaggy/mht_selection