GitHub - matsengrp/bioboxpartis: This repository contains the partis project (https://github.com/psathyrella/partis) packaged into a biobox (http://bioboxes.org/).

partis

Partis is an HMM-based framework for B-cell receptor annotation, simulation, and partitioning. It is built on top of the ham HMM compiler, and also uses the ighutil set of Smith-Waterman annotation tools.

The manual is available here.

Partis is free software under the GPL v3.

Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
bin		bin
data		data
input_data		input_data
output_data		output_data
packages		packages
partis		partis
plotting		plotting
python		python
sampleOutput		sampleOutput
temp		temp
test		test
COPYING		COPYING
Dockerfile		Dockerfile
README.md		README.md
SConstruct		SConstruct
assemble.sh		assemble.sh
bbxpartismanual.txt		bbxpartismanual.txt
manual.md		manual.md
parse_yaml.sh		parse_yaml.sh
rootlogon.C		rootlogon.C

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matsengrp/bioboxpartis

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