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fish

This repository contains a handful of tools for basic data analysis in the Ahrens lab:

  • ephys data: loading ephys data from binary files, estimation of fictive swim events
  • imaging data: loading images + metadata from our light sheet microscope, basic (linear) image registration using dipy

Installation: until I get around to putting this repo on pip or conda, this library can be installed by cloning this repository and running python setup.py install in the resulting directory.

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Tools for working with zebrafish data generated by the Ahrens lab at Janelia Research Campus

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  • Python 100.0%