Exemplo n.º 1
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def getCladeA():
    clade = Clade('Deltaproteobacteria')
    # pre-fetch collective metabolism into memory
    clade.collectiveMetabolism(excludeMultifunctionalEnzymes=True)
    # pre-fetch collective enzyme metabolism into memory
    clade.collectiveMetabolismEnzymes(excludeMultifunctionalEnzymes=True)
    return clade
Exemplo n.º 2
0
def getDesulfobacteralesClade():
    archaeaClade = Clade('Deltaproteobacteria/Desulfobacterales')
    # pre-fetch collective metabolism into memory
    archaeaClade.collectiveMetabolism(excludeMultifunctionalEnzymes=True)
    # pre-fetch collective enzyme metabolism into memory
    archaeaClade.collectiveMetabolismEnzymes(excludeMultifunctionalEnzymes=True)
    return archaeaClade
Exemplo n.º 3
0
def getClade():
    clade = Clade('Archaea')
    # pre-fetch collective metabolism into memory
    clade.collectiveMetabolism(
        excludeMultifunctionalEnzymes=settings.defaultNoMultifunctional)
    # pre-fetch collective enzyme metabolism into memory
    clade.collectiveMetabolismEnzymes(
        excludeMultifunctionalEnzymes=settings.defaultNoMultifunctional)
    return clade
Exemplo n.º 4
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def getArchaeaClade():
    archaeaClade = Clade('/Archaea')
    # pre-fetch collective metabolism into memory
    archaeaClade.collectiveMetabolism(excludeMultifunctionalEnzymes=True)
    return archaeaClade
Exemplo n.º 5
0
def getGammaproteobacteriaClade():
    clade = Clade('Proteobacteria/Gammaproteobacteria')
    # pre-fetch collective metabolism into memory
    clade.collectiveMetabolism(excludeMultifunctionalEnzymes=True)
    return clade
Exemplo n.º 6
0
def getBacteriaClade():
    bacteriaClade = Clade('/Bacteria')
    # pre-fetch collective metabolism into memory
    bacteriaClade.collectiveMetabolism(excludeMultifunctionalEnzymes=True)
    return bacteriaClade