def test_object_from_id(self):
print(RDFTypeTable)
g = DataObject.object_from_id('http://openworm.org/entities/Neuron')
self.assertIsInstance(g, Neuron)
g = DataObject.object_from_id(
'http://openworm.org/entities/Connection')
self.assertIsInstance(g, Connection)
def test_uploader(self):
""" Make sure that we're marking a statement with it's uploader """
g = make_graph(20)
r = DataObject(triples=g, conf=self.config)
r.save()
u = r.uploader()
self.assertEqual(self.config['user.email'], u)
def test_uploader(self):
""" Make sure that we're marking a statement with it's uploader """
g = make_graph(20)
r = DataObject(triples=g, conf=self.config)
r.save()
u = r.uploader()
self.assertEqual(self.config['user.email'], u)
def test_upload_date(self):
""" Make sure that we're marking a statement with it's upload date """
g = make_graph(20)
r = DataObject(triples=g)
r.save()
u = r.upload_date()
self.assertIsNotNone(u)
def test_upload_date(self):
""" Make sure that we're marking a statement with it's upload date """
g = make_graph(20)
r = DataObject(triples=g)
r.save()
u = r.upload_date()
self.assertIsNotNone(u)
def __init__(self, triples=None, graph=None, **kwargs):
DataObject.__init__(self, **kwargs)
if triples is None:
triples = []
if graph is not None:
self._triples = graph
else:
self._triples = triples
def __init__(self,triples=None,graph=None,**kwargs):
DataObject.__init__(self,**kwargs)
if triples is None:
triples = []
if graph is not None:
self._triples = graph
else:
self._triples = triples
def test_same_value_same_id_empty(self):
"""
Test that two SimpleProperty objects with the same name have the same identifier()
"""
do = DataObject(ident=R.URIRef("http://example.org"))
do1 = DataObject(ident=R.URIRef("http://example.org"))
c = DataObject.DatatypeProperty("boots", do)
c1 = DataObject.DatatypeProperty("boots", do1)
self.assertEqual(c.identifier(), c1.identifier())
def test_diff_value_diff_id_not_equal(self):
"""
Test that two SimpleProperty with the same name have the same identifier()
"""
do = DataObject(ident=R.URIRef("http://example.org"))
do1 = DataObject(ident=R.URIRef("http://example.org"))
c = DataObject.DatatypeProperty("boots", do)
c1 = DataObject.DatatypeProperty("boots", do1)
do.boots('join')
do1.boots('partition')
self.assertNotEqual(c.identifier(), c1.identifier())
def test_diff_prop_same_name_same_object_same_value_same_id(self):
"""
Test that two SimpleProperty with the same name have the same identifier
"""
# why would you ever do this?
do = DataObject(ident=R.URIRef("http://example.org"))
c = DataObject.DatatypeProperty("boots", do)
c1 = DataObject.DatatypeProperty("boots", do)
c('join')
c1('join')
self.assertEqual(c.identifier(), c1.identifier())
def test_diff_prop_same_name_same_object_diff_value_diff_id(self):
"""
Test that two SimpleProperty with the same name, but different values
have distinct identifiers
"""
# why would you ever do this?
do = DataObject(ident=R.URIRef("http://example.org"))
c = DataObject.DatatypeProperty("boots", do)
c1 = DataObject.DatatypeProperty("boots", do)
c('partition')
c1('join')
self.assertNotEqual(c.identifier(), c1.identifier())
def test_triples_with_no_value(self):
""" Test that when there is no value set for a property, it still yields triples """
do = DataObject(ident=R.URIRef("http://example.org"))
class T(SimpleProperty):
property_type = 'DatatypeProperty'
linkName = 'test'
owner_type = DataObject
sp = DataObject.attach_property(do, T)
self.assertEqual(len(list(sp.triples())), 0)
self.assertEqual(len(list(sp.triples(query=True))), 0)
def identifier(self, *args, **kwargs):
ident = DataObject.identifier(self, *args, **kwargs)
if 'query' in kwargs and kwargs['query'] == True:
if not DataObject._is_variable(ident):
return ident
owners = self.getOwners(P.Worm().neuron_network.link)
data = []
for x in owners:
ident = x.identifier(query=True) # XXX: Query is set to true so a fixed identifier isn't generated randomly
if not DataObject._is_variable(ident):
data.append(ident)
data = sorted(data)
return self.make_identifier(data)
def test_diff_value_insert_order_same_id(self):
"""
Test that two SimpleProperty with the same name have the same identifier()
"""
do = DataObject(ident=R.URIRef("http://example.org"))
do1 = DataObject(ident=R.URIRef("http://example.org"))
c = DataObject.DatatypeProperty("boots", do, multiple=True)
c1 = DataObject.DatatypeProperty("boots", do1, multiple=True)
do.boots('join')
do.boots('simile')
do.boots('partition')
do1.boots('partition')
do1.boots('join')
do1.boots('simile')
self.assertEqual(c.identifier(), c1.identifier())
def test_object_property_diff_value_insert_order_same_id(self):
"""
Test that two SimpleProperty with the same name have the same identifier()
"""
do = DataObject(ident=R.URIRef("http://example.org"))
do1 = DataObject(ident=R.URIRef("http://example.org"))
oa = DataObject(ident=R.URIRef("http://example.org/a"))
ob = DataObject(ident=R.URIRef("http://example.org/b"))
oc = DataObject(ident=R.URIRef("http://example.org/c"))
c = DataObject.ObjectProperty("boots", do, multiple=True)
c1 = DataObject.ObjectProperty("boots", do1, multiple=True)
do.boots(oa)
do.boots(ob)
do.boots(oc)
do1.boots(oc)
do1.boots(oa)
do1.boots(ob)
self.assertEqual(c.identifier(), c1.identifier())
def test_object_from_id(self):
print(RDFTypeTable)
g = DataObject.object_from_id('http://openworm.org/entities/Neuron')
self.assertIsInstance(g, Neuron)
g = DataObject.object_from_id('http://openworm.org/entities/Connection')
self.assertIsInstance(g, Connection)
def test_identifier(self):
""" Test that we can set and return an identifier """
do = DataObject(ident="http://example.org")
self.assertEqual(do.identifier(), R.URIRef("http://example.org"))
def test_same_value_same_id_not_empty_object_property(self):
"""
Test that two SimpleProperty with the same name have the same identifier()
"""
do = DataObject(ident=R.URIRef("http://example.org"))
do1 = DataObject(ident=R.URIRef("http://example.org"))
dz = DataObject(ident=R.URIRef("http://example.org/vip"))
dz1 = DataObject(ident=R.URIRef("http://example.org/vip"))
c = DataObject.ObjectProperty("boots", do)
c1 = DataObject.ObjectProperty("boots", do1)
do.boots(dz)
do1.boots(dz1)
self.assertEqual(c.identifier(), c1.identifier())
def test_DataUser(self):
do = DataObject()
self.assertTrue(isinstance(do, PyOpenWorm.DataUser))
def __init__(self, name, conf=False):
DataObject.__init__(self,conf=conf)
self._name = name
def test_identifier(self):
""" Test that we can set and return an identifier """
do = DataObject(ident="http://example.org")
self.assertEqual(do.identifier(), R.URIRef("http://example.org"))
def __init__(self, **kwargs):
DataObject.__init__(self,**kwargs)
self.synapses = Network.ObjectProperty('synapse', owner=self, value_type=P.Connection, multiple=True)
Network.ObjectProperty('neuron',owner=self,value_type=P.Neuron, multiple=True)
def __init__(self, conf=False):
DataObject.__init__(self,conf=conf)
def __init__(self, data=False, *args, **kwargs):
DataObject.__init__(self, **kwargs)
Plot.DatatypeProperty('_data_string', self, multiple=False)
if data:
self.set_data(data)
def __init__(self, name, conf=False):
DataObject.__init__(self, conf=conf)
self._name = name
def test_repr(self):
self.assertRegexpMatches(
repr(DataObject(ident="http://example.com")),
r"DataObject\(ident=rdflib\.term\.URIRef\("
r"u?[\"']http://example.com[\"']\)\)")