def setUp(self):
# Retreive owl file for NIDM-Results
owl_file = os.path.join(NIDM_RESULTS_DIR, TERM_RESULTS_DIRNAME,
'nidm-results.owl')
import_files = glob.glob(
os.path.join(os.path.dirname(owl_file),
os.pardir, os.pardir, "imports", '*.ttl'))
TestResultDataModel.setUp(self, owl_file, import_files, test_files,
TEST_DIR, NIDM_RESULTS_DIR)
def setUp(self):
TestResultDataModel.setUp(self)
self.ground_truth_dir = os.path.join(NIDM_RESULTS_DIR,'fsl', 'example001')
self.fsl_export_ttl = os.path.join(TEST_FOLDER, 'FSL_example.ttl');
# RDF obtained by the FSL export
self.fslexport = Graph()
# self.fsl_export_ttl = os.path.join(self.test_dir, 'fsl', 'export', 'test01', 'fsl_nidm.ttl');
self.fslexport.parse(self.fsl_export_ttl, format='turtle')
# Retreive owl file for NIDM-Results
self.owl_file = os.path.join(TERM_RESULTS_DIR, 'nidm-results.owl')
def setUp(self):
self.my_execption = ""
# Display log messages in console
logging.basicConfig(
level=logging.DEBUG,
format='%(asctime)s - %(levelname)s - %(message)s')
# Retreive owl file for NIDM-Results
owl_file = os.path.join(NIDM_RESULTS_DIR, 'terms', 'nidm-results.owl')
# Retreive imported owl files from NIDM-Results
owl_imports = glob.glob(os.path.join(
os.path.dirname(owl_file),
os.pardir, os.pardir, "imports", '*.ttl'))
gt_dir = os.path.join(TEST_DIR, 'spmexport', 'ground_truth')
TestResultDataModel.setUp(self, owl_file, owl_imports, test_files,
TEST_DIR, gt_dir)
def setUp(self):
self.my_execption = ""
# Display log messages in console
logging.basicConfig(level=logging.DEBUG, format='%(asctime)s - %(levelname)s - %(message)s')
TestResultDataModel.setUp(self)
self.ground_truth_dir = os.path.join(self.ground_truth_dir, 'spm', 'example001')
# Current module directory is used as test directory
self.test_dir = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'spmexport', 'example001')
# RDF obtained by the SPM export
self.spmexport = Graph()
# Turtle file obtained with SPM NI-DM export tool
self.spm_export_ttl = os.path.join(self.test_dir, 'spm_nidm.ttl');
print "\n\nComparing: "+self.spm_export_ttl
self.spmexport.parse(self.spm_export_ttl, format='turtle')
def setUp(self):
self.my_execption = ""
# Display log messages in console
logging.basicConfig(level=logging.DEBUG,
format='%(asctime)s - %(levelname)s - %(message)s')
TestResultDataModel.setUp(self)
self.ground_truth_dir = os.path.join(self.ground_truth_dir, 'spm',
'example001')
# Current module directory is used as test directory
self.test_dir = os.path.join(
os.path.dirname(os.path.abspath(__file__)), 'spmexport',
'example001')
# RDF obtained by the SPM export
self.spmexport = Graph()
# Turtle file obtained with SPM NI-DM export tool
self.spm_export_ttl = os.path.join(self.test_dir, 'spm_nidm.ttl')
print "\n\nComparing: " + self.spm_export_ttl
self.spmexport.parse(self.spm_export_ttl, format='turtle')
