def main():
tools = {
"info": ProjectInfo,
"run": ProjectRun,
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
Tool(*args, **kwargs)
def main():
tools = {
"mapman": Mapman,
"b2m": BrixToMap
}
Tool, args, kwargs = parse_subargs( tools, description=__doc__ )
print Tool( *args, **kwargs )
def main():
tools = {
"pdb": Dowser,
"repeat": DowserRepeat
}
Tool, args, kwargs = parse_subargs( tools, description=__doc__ )
print Tool( *args, **kwargs )
def main():
tools = {
"finder": CapsMotifFinder,
"strucinfo": StructureGetter,
"superpose": Superpose
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"pdb": Tmdet,
"info": PdbtmInfo,
"id": Pdbtm,
"list": PdbtmList,
"db": PdbtmDownload
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"id": Opm,
"list": OpmList,
"info": OpmInfo,
"pdb": Ppm,
"id2": Ppm2
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"linkit": LinkIt,
"linkit+dens": LinkItDensity,
"linkvali": LnkItVali,
"analyse": AnalyseLiniktRun,
"multi-linkit": MultiLinkIt,
"ssfe": SSFELinkIt,
"ssfemulti": SSFEMultiLinkIt,
"ssfestat": SSFEStatistic,
"ssfezip": SSFEZip,
"ssfefailed": SSFEFailed,
"cut": CutPDB,
"cut2": CutPDB2
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"SplitSSE": SplitPdbSSE,
"get": PdbDownload,
"split": PdbSplit,
"unzip": PdbUnzip,
"het": PdbHetDictionary,
"superpose": PdbSuperpose,
"edit": PdbEdit,
"info": PdbInfo,
"rna": RnaList,
"compare": ListCompare,
"join": ListJoin,
"assembly": PdbAssembly,
"delete": LoopDelete,
"rotamere": MakeAllRotameres,
"joinsplitted": JoinSplitted
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"mrc": MrcHeaderPrinter,
"script": Spider,
"shift": SpiderShift,
"convert": SpiderConvert,
"delFilledDens": SpiderDeleteFilledDensities,
"box": SpiderBox,
"reconvert": SpiderReConvert,
"crosscorrel": SpiderCrosscorrelation,
"loopcorrel": LoopCrosscorrel,
"pdbbox": SpiderPdbBox,
"sidechaincc": SpiderSidechainCorrelation,
"loopsidechain": LoopSidechainCorrelation,
"deletebb": SpiderDeleteBackbone,
"buildbest": BuildBest,
"optimize": OptimizeRotamer,
"loopoptimize": LoopRotamerOptimize,
"sidestat": SideChainStatistics,
"crop": SpiderCropMap,
"cropmrc": SpiderCropMrc,
"analyse": SpiderAnalyse,
"analyse2": SpiderAnalyse2,
"analyse3": SpiderAnalyse3,
"loopcorrel2": LoopCrosscorrel2,
"loopcorrel3": LoopCrosscorrel3,
"ccori": Calcoricc,
"loopcc": Looporicc,
"build": BuildModel,
"analyse_dssp": Analyse_DSSP,
"loopsrmsd": LinkItRMSD,
"repairloops": RepairLoops,
"rlinkitloops": RepairLinkItLoops,
"repair2": RepairLoops2,
"superanalyse": SuperLooperAnalyse,
"shorten": ShortenLoops,
"multiloopcc": MultiLooporicc,
"multianalyse": MultiSpiderAnalyse2
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"linkit": LinkIt,
"linkit+dens": LinkItDensity,
#"test": LinkerTest,
"linkvali": LnkItVali,
"analyse": AnalyseLiniktRun,
#"multi-linkit": MultiLinkIt
"cut": CutPDB,
"cut2": CutPDB2,
"linkit+dens2": LinkItDensity2_analyse,
"cut3": CutPDB3,
"linkit+dens3": LinkItDensity3,
"calcsheets": CalcSheets,
"multilinkdens": MultiLinkItDensity,
"multicut": MultiCutPDB,
"linkitlist": LinkItList,
"seqlist": PdbSequence
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {
"mrc": MrcHeaderPrinter,
"script": Spider,
"shift": SpiderShift,
"convert": SpiderConvert,
"delFilledDens": SpiderDeleteFilledDensities,
"box": SpiderBox,
"reconvert": SpiderReConvert,
"crosscorrel": SpiderCrosscorrelation,
"loopcorrel": LoopCrosscorrel,
"pdbbox": SpiderPdbBox,
"sidechaincc": SpiderSidechainCorrelation,
"loopsidechain": LoopSidechainCorrelation,
"deletebb": SpiderDeleteBackbone,
"buildbest": BuildBest,
"optimize": OptimizeRotamer,
"loopoptimize": LoopRotamerOptimize,
"sidestat": SideChainStatistics,
"crop": SpiderCropMap,
"cropmrc": SpiderCropMrc,
}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {"script": Jmol, "image": JmolImage, "jvxl": JmolJvxl}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {"db": MpstrucDownload, "info": MpstrucInfo, "list": MpstrucList}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {"solvate": Solvate}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {"pdb": MppdPipeline, "stats": MppdStats}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {"pdb": Sstruc, "info": SstrucInfo, "find": SstrucFinder}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
tools = {"pipe": VoronoiaPipeline}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)
def main():
#args, kwargs = parse_args( Muscle )
#print Muscle( *args, **kwargs )
tools = {"muscle": Muscle, "tmf": TheseusMakeFasta}
Tool, args, kwargs = parse_subargs(tools, description=__doc__)
print Tool(*args, **kwargs)